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HealthOmics variant stores
HealthOmics annotation stores
Private workflows
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", "endpoint":{"hostPrefix":"analytics-"} }, "ListMultipartReadSetUploads":{ "name":"ListMultipartReadSetUploads", "http":{ "method":"POST", "requestUri":"/sequencestore/{sequenceStoreId}/uploads", "responseCode":200 }, "input":{"shape":"ListMultipartReadSetUploadsRequest"}, "output":{"shape":"ListMultipartReadSetUploadsResponse"}, "errors":[ {"shape":"InternalServerException"}, {"shape":"NotSupportedOperationException"}, {"shape":"ServiceQuotaExceededException"}, {"shape":"ThrottlingException"}, {"shape":"ValidationException"}, {"shape":"ResourceNotFoundException"}, {"shape":"AccessDeniedException"}, {"shape":"RequestTimeoutException"} ], "documentation":"Lists multipart read set uploads and for in progress uploads. Once the upload is completed, a read set is created and the upload will no longer be returned in the response.
", "endpoint":{"hostPrefix":"control-storage-"} }, "ListReadSetActivationJobs":{ "name":"ListReadSetActivationJobs", "http":{ "method":"POST", "requestUri":"/sequencestore/{sequenceStoreId}/activationjobs", "responseCode":200 }, "input":{"shape":"ListReadSetActivationJobsRequest"}, "output":{"shape":"ListReadSetActivationJobsResponse"}, "errors":[ {"shape":"InternalServerException"}, {"shape":"ThrottlingException"}, {"shape":"ValidationException"}, {"shape":"ResourceNotFoundException"}, {"shape":"AccessDeniedException"}, {"shape":"RequestTimeoutException"} ], "documentation":"Retrieves a list of read set activation jobs.
", "endpoint":{"hostPrefix":"control-storage-"} }, "ListReadSetExportJobs":{ "name":"ListReadSetExportJobs", "http":{ "method":"POST", "requestUri":"/sequencestore/{sequenceStoreId}/exportjobs", "responseCode":200 }, "input":{"shape":"ListReadSetExportJobsRequest"}, "output":{"shape":"ListReadSetExportJobsResponse"}, "errors":[ {"shape":"InternalServerException"}, {"shape":"ThrottlingException"}, {"shape":"ValidationException"}, {"shape":"ResourceNotFoundException"}, {"shape":"AccessDeniedException"}, {"shape":"RequestTimeoutException"} ], "documentation":"Retrieves a list of read set export jobs.
", "endpoint":{"hostPrefix":"control-storage-"} }, "ListReadSetImportJobs":{ "name":"ListReadSetImportJobs", "http":{ "method":"POST", "requestUri":"/sequencestore/{sequenceStoreId}/importjobs", "responseCode":200 }, "input":{"shape":"ListReadSetImportJobsRequest"}, "output":{"shape":"ListReadSetImportJobsResponse"}, "errors":[ {"shape":"InternalServerException"}, {"shape":"ThrottlingException"}, {"shape":"ValidationException"}, {"shape":"ResourceNotFoundException"}, {"shape":"AccessDeniedException"}, {"shape":"RequestTimeoutException"} ], "documentation":"Retrieves a list of read set import jobs.
", "endpoint":{"hostPrefix":"control-storage-"} }, "ListReadSetUploadParts":{ "name":"ListReadSetUploadParts", "http":{ "method":"POST", "requestUri":"/sequencestore/{sequenceStoreId}/upload/{uploadId}/parts", "responseCode":200 }, "input":{"shape":"ListReadSetUploadPartsRequest"}, "output":{"shape":"ListReadSetUploadPartsResponse"}, "errors":[ {"shape":"InternalServerException"}, {"shape":"NotSupportedOperationException"}, {"shape":"ServiceQuotaExceededException"}, {"shape":"ThrottlingException"}, {"shape":"ValidationException"}, {"shape":"ResourceNotFoundException"}, {"shape":"AccessDeniedException"}, {"shape":"RequestTimeoutException"} ], "documentation":"This operation will list all parts in a requested multipart upload for a sequence store.
", "endpoint":{"hostPrefix":"control-storage-"} }, "ListReadSets":{ "name":"ListReadSets", "http":{ "method":"POST", "requestUri":"/sequencestore/{sequenceStoreId}/readsets", "responseCode":200 }, "input":{"shape":"ListReadSetsRequest"}, "output":{"shape":"ListReadSetsResponse"}, "errors":[ {"shape":"InternalServerException"}, {"shape":"ThrottlingException"}, {"shape":"ValidationException"}, {"shape":"ResourceNotFoundException"}, {"shape":"AccessDeniedException"}, {"shape":"RequestTimeoutException"} ], "documentation":"Retrieves a list of read sets.
", "endpoint":{"hostPrefix":"control-storage-"} }, "ListReferenceImportJobs":{ "name":"ListReferenceImportJobs", "http":{ "method":"POST", "requestUri":"/referencestore/{referenceStoreId}/importjobs", "responseCode":200 }, "input":{"shape":"ListReferenceImportJobsRequest"}, "output":{"shape":"ListReferenceImportJobsResponse"}, "errors":[ {"shape":"InternalServerException"}, {"shape":"ThrottlingException"}, {"shape":"ValidationException"}, {"shape":"ResourceNotFoundException"}, {"shape":"AccessDeniedException"}, {"shape":"RequestTimeoutException"} ], "documentation":"Retrieves a list of reference import jobs.
", "endpoint":{"hostPrefix":"control-storage-"} }, "ListReferenceStores":{ "name":"ListReferenceStores", "http":{ "method":"POST", "requestUri":"/referencestores", "responseCode":200 }, "input":{"shape":"ListReferenceStoresRequest"}, "output":{"shape":"ListReferenceStoresResponse"}, "errors":[ {"shape":"InternalServerException"}, {"shape":"ThrottlingException"}, {"shape":"ValidationException"}, {"shape":"AccessDeniedException"}, {"shape":"RequestTimeoutException"} ], "documentation":"Retrieves a list of reference stores.
", "endpoint":{"hostPrefix":"control-storage-"} }, "ListReferences":{ "name":"ListReferences", "http":{ "method":"POST", "requestUri":"/referencestore/{referenceStoreId}/references", "responseCode":200 }, "input":{"shape":"ListReferencesRequest"}, "output":{"shape":"ListReferencesResponse"}, "errors":[ {"shape":"InternalServerException"}, {"shape":"ThrottlingException"}, {"shape":"ValidationException"}, {"shape":"ResourceNotFoundException"}, {"shape":"AccessDeniedException"}, {"shape":"RequestTimeoutException"} ], "documentation":"Retrieves a list of references.
", "endpoint":{"hostPrefix":"control-storage-"} }, "ListRunCaches":{ "name":"ListRunCaches", "http":{ "method":"GET", "requestUri":"/runCache", "responseCode":200 }, "input":{"shape":"ListRunCachesRequest"}, "output":{"shape":"ListRunCachesResponse"}, "errors":[ {"shape":"InternalServerException"}, {"shape":"ServiceQuotaExceededException"}, {"shape":"ThrottlingException"}, {"shape":"ValidationException"}, {"shape":"ConflictException"}, {"shape":"ResourceNotFoundException"}, {"shape":"AccessDeniedException"}, {"shape":"RequestTimeoutException"} ], "documentation":"Retrieves a list of your run caches.
", "endpoint":{"hostPrefix":"workflows-"} }, "ListRunGroups":{ "name":"ListRunGroups", "http":{ "method":"GET", "requestUri":"/runGroup", "responseCode":200 }, "input":{"shape":"ListRunGroupsRequest"}, "output":{"shape":"ListRunGroupsResponse"}, "errors":[ {"shape":"InternalServerException"}, {"shape":"ServiceQuotaExceededException"}, {"shape":"ThrottlingException"}, {"shape":"ValidationException"}, {"shape":"ConflictException"}, {"shape":"ResourceNotFoundException"}, {"shape":"AccessDeniedException"}, {"shape":"RequestTimeoutException"} ], "documentation":"Retrieves a list of run groups.
", "endpoint":{"hostPrefix":"workflows-"} }, "ListRunTasks":{ "name":"ListRunTasks", "http":{ "method":"GET", "requestUri":"/run/{id}/task", "responseCode":200 }, "input":{"shape":"ListRunTasksRequest"}, "output":{"shape":"ListRunTasksResponse"}, "errors":[ {"shape":"InternalServerException"}, {"shape":"ServiceQuotaExceededException"}, {"shape":"ThrottlingException"}, {"shape":"ValidationException"}, {"shape":"ConflictException"}, {"shape":"ResourceNotFoundException"}, {"shape":"AccessDeniedException"}, {"shape":"RequestTimeoutException"} ], "documentation":"Retrieves a list of tasks for a run.
", "endpoint":{"hostPrefix":"workflows-"} }, "ListRuns":{ "name":"ListRuns", "http":{ "method":"GET", "requestUri":"/run", "responseCode":200 }, "input":{"shape":"ListRunsRequest"}, "output":{"shape":"ListRunsResponse"}, "errors":[ {"shape":"InternalServerException"}, {"shape":"ServiceQuotaExceededException"}, {"shape":"ThrottlingException"}, {"shape":"ValidationException"}, {"shape":"ConflictException"}, {"shape":"ResourceNotFoundException"}, {"shape":"AccessDeniedException"}, {"shape":"RequestTimeoutException"} ], "documentation":"Retrieves a list of runs.
HealthOmics stores a fixed number of runs that are available to the console and API. If the ListRuns response doesn't include specific runs that you expected, you can find run logs for all runs in the CloudWatch logs. For more information about viewing the run logs, see CloudWatch logs in the AWS HealthOmics User Guide.
", "endpoint":{"hostPrefix":"workflows-"} }, "ListSequenceStores":{ "name":"ListSequenceStores", "http":{ "method":"POST", "requestUri":"/sequencestores", "responseCode":200 }, "input":{"shape":"ListSequenceStoresRequest"}, "output":{"shape":"ListSequenceStoresResponse"}, "errors":[ {"shape":"InternalServerException"}, {"shape":"ThrottlingException"}, {"shape":"ValidationException"}, {"shape":"AccessDeniedException"}, {"shape":"RequestTimeoutException"} ], "documentation":"Retrieves a list of sequence stores.
", "endpoint":{"hostPrefix":"control-storage-"} }, "ListShares":{ "name":"ListShares", "http":{ "method":"POST", "requestUri":"/shares", "responseCode":200 }, "input":{"shape":"ListSharesRequest"}, "output":{"shape":"ListSharesResponse"}, "errors":[ {"shape":"InternalServerException"}, {"shape":"ServiceQuotaExceededException"}, {"shape":"ThrottlingException"}, {"shape":"ValidationException"}, {"shape":"ConflictException"}, {"shape":"ResourceNotFoundException"}, {"shape":"AccessDeniedException"} ], "documentation":"Retrieves the resource shares associated with an account. Use the filter parameter to retrieve a specific subset of the shares.
", "endpoint":{"hostPrefix":"analytics-"} }, "ListTagsForResource":{ "name":"ListTagsForResource", "http":{ "method":"GET", "requestUri":"/tags/{resourceArn}", "responseCode":200 }, "input":{"shape":"ListTagsForResourceRequest"}, "output":{"shape":"ListTagsForResourceResponse"}, "errors":[ {"shape":"InternalServerException"}, {"shape":"ServiceQuotaExceededException"}, {"shape":"ThrottlingException"}, {"shape":"ValidationException"}, {"shape":"ConflictException"}, {"shape":"ResourceNotFoundException"}, {"shape":"AccessDeniedException"}, {"shape":"RequestTimeoutException"} ], "documentation":"Retrieves a list of tags for a resource.
", "endpoint":{"hostPrefix":"tags-"} }, "ListVariantImportJobs":{ "name":"ListVariantImportJobs", "http":{ "method":"POST", "requestUri":"/import/variants", "responseCode":200 }, "input":{"shape":"ListVariantImportJobsRequest"}, "output":{"shape":"ListVariantImportJobsResponse"}, "errors":[ {"shape":"InternalServerException"}, {"shape":"ThrottlingException"}, {"shape":"ValidationException"}, {"shape":"ResourceNotFoundException"}, {"shape":"AccessDeniedException"} ], "documentation":"Retrieves a list of variant import jobs.
", "endpoint":{"hostPrefix":"analytics-"} }, "ListVariantStores":{ "name":"ListVariantStores", "http":{ "method":"POST", "requestUri":"/variantStores", "responseCode":200 }, "input":{"shape":"ListVariantStoresRequest"}, "output":{"shape":"ListVariantStoresResponse"}, "errors":[ {"shape":"InternalServerException"}, {"shape":"ThrottlingException"}, {"shape":"ValidationException"}, {"shape":"ResourceNotFoundException"}, {"shape":"AccessDeniedException"} ], "documentation":"Retrieves a list of variant stores.
", "endpoint":{"hostPrefix":"analytics-"} }, "ListWorkflows":{ "name":"ListWorkflows", "http":{ "method":"GET", "requestUri":"/workflow", "responseCode":200 }, "input":{"shape":"ListWorkflowsRequest"}, "output":{"shape":"ListWorkflowsResponse"}, "errors":[ {"shape":"InternalServerException"}, {"shape":"ServiceQuotaExceededException"}, {"shape":"ThrottlingException"}, {"shape":"ValidationException"}, {"shape":"ConflictException"}, {"shape":"ResourceNotFoundException"}, {"shape":"AccessDeniedException"}, {"shape":"RequestTimeoutException"} ], "documentation":"Retrieves a list of workflows.
", "endpoint":{"hostPrefix":"workflows-"} }, "PutS3AccessPolicy":{ "name":"PutS3AccessPolicy", "http":{ "method":"PUT", "requestUri":"/s3accesspolicy/{s3AccessPointArn}", "responseCode":200 }, "input":{"shape":"PutS3AccessPolicyRequest"}, "output":{"shape":"PutS3AccessPolicyResponse"}, "errors":[ {"shape":"InternalServerException"}, {"shape":"NotSupportedOperationException"}, {"shape":"ThrottlingException"}, {"shape":"ValidationException"}, {"shape":"ResourceNotFoundException"}, {"shape":"AccessDeniedException"}, {"shape":"RequestTimeoutException"} ], "documentation":"Adds an access policy to the specified store.
", "endpoint":{"hostPrefix":"control-storage-"} }, "StartAnnotationImportJob":{ "name":"StartAnnotationImportJob", "http":{ "method":"POST", "requestUri":"/import/annotation", "responseCode":200 }, "input":{"shape":"StartAnnotationImportRequest"}, "output":{"shape":"StartAnnotationImportResponse"}, "errors":[ {"shape":"InternalServerException"}, {"shape":"ServiceQuotaExceededException"}, {"shape":"ThrottlingException"}, {"shape":"ValidationException"}, {"shape":"ResourceNotFoundException"}, {"shape":"AccessDeniedException"} ], "documentation":"Starts an annotation import job.
", "endpoint":{"hostPrefix":"analytics-"} }, "StartReadSetActivationJob":{ "name":"StartReadSetActivationJob", "http":{ "method":"POST", "requestUri":"/sequencestore/{sequenceStoreId}/activationjob", "responseCode":200 }, "input":{"shape":"StartReadSetActivationJobRequest"}, "output":{"shape":"StartReadSetActivationJobResponse"}, "errors":[ {"shape":"InternalServerException"}, {"shape":"ServiceQuotaExceededException"}, {"shape":"ThrottlingException"}, {"shape":"ValidationException"}, {"shape":"ResourceNotFoundException"}, {"shape":"AccessDeniedException"}, {"shape":"RequestTimeoutException"} ], "documentation":"Activates an archived read set. To reduce storage charges, Amazon Omics archives unused read sets after 30 days.
", "endpoint":{"hostPrefix":"control-storage-"} }, "StartReadSetExportJob":{ "name":"StartReadSetExportJob", "http":{ "method":"POST", "requestUri":"/sequencestore/{sequenceStoreId}/exportjob", "responseCode":200 }, "input":{"shape":"StartReadSetExportJobRequest"}, "output":{"shape":"StartReadSetExportJobResponse"}, "errors":[ {"shape":"InternalServerException"}, {"shape":"ServiceQuotaExceededException"}, {"shape":"ThrottlingException"}, {"shape":"ValidationException"}, {"shape":"ResourceNotFoundException"}, {"shape":"AccessDeniedException"}, {"shape":"RequestTimeoutException"} ], "documentation":"Exports a read set to Amazon S3.
", "endpoint":{"hostPrefix":"control-storage-"} }, "StartReadSetImportJob":{ "name":"StartReadSetImportJob", "http":{ "method":"POST", "requestUri":"/sequencestore/{sequenceStoreId}/importjob", "responseCode":200 }, "input":{"shape":"StartReadSetImportJobRequest"}, "output":{"shape":"StartReadSetImportJobResponse"}, "errors":[ {"shape":"InternalServerException"}, {"shape":"ServiceQuotaExceededException"}, {"shape":"ThrottlingException"}, {"shape":"ValidationException"}, {"shape":"ResourceNotFoundException"}, {"shape":"AccessDeniedException"}, {"shape":"RequestTimeoutException"} ], "documentation":"Starts a read set import job.
", "endpoint":{"hostPrefix":"control-storage-"} }, "StartReferenceImportJob":{ "name":"StartReferenceImportJob", "http":{ "method":"POST", "requestUri":"/referencestore/{referenceStoreId}/importjob", "responseCode":200 }, "input":{"shape":"StartReferenceImportJobRequest"}, "output":{"shape":"StartReferenceImportJobResponse"}, "errors":[ {"shape":"InternalServerException"}, {"shape":"ServiceQuotaExceededException"}, {"shape":"ThrottlingException"}, {"shape":"ValidationException"}, {"shape":"ResourceNotFoundException"}, {"shape":"AccessDeniedException"}, {"shape":"RequestTimeoutException"} ], "documentation":"Starts a reference import job.
", "endpoint":{"hostPrefix":"control-storage-"} }, "StartRun":{ "name":"StartRun", "http":{ "method":"POST", "requestUri":"/run", "responseCode":201 }, "input":{"shape":"StartRunRequest"}, "output":{"shape":"StartRunResponse"}, "errors":[ {"shape":"InternalServerException"}, {"shape":"ServiceQuotaExceededException"}, {"shape":"ThrottlingException"}, {"shape":"ValidationException"}, {"shape":"ConflictException"}, {"shape":"ResourceNotFoundException"}, {"shape":"AccessDeniedException"}, {"shape":"RequestTimeoutException"} ], "documentation":"Starts a workflow run. To duplicate a run, specify the run's ID and a role ARN. The remaining parameters are copied from the previous run.
StartRun will not support re-run for a workflow that is shared with you.
HealthOmics stores a fixed number of runs that are available to the console and API. By default, HealthOmics doesn't any remove any runs. If HealthOmics reaches the maximum number of runs, you must manually remove runs. To have older runs removed automatically, set the retention mode to REMOVE.
By default, the run uses STATIC storage. For STATIC storage, set the storageCapacity field. You can set the storage type to DYNAMIC. You do not set storageCapacity, because HealthOmics dynamically scales the storage up or down as required. For more information about static and dynamic storage, see Running workflows in the AWS HealthOmics User Guide.
Starts a variant import job.
", "endpoint":{"hostPrefix":"analytics-"} }, "TagResource":{ "name":"TagResource", "http":{ "method":"POST", "requestUri":"/tags/{resourceArn}", "responseCode":204 }, "input":{"shape":"TagResourceRequest"}, "output":{"shape":"TagResourceResponse"}, "errors":[ {"shape":"InternalServerException"}, {"shape":"ServiceQuotaExceededException"}, {"shape":"ThrottlingException"}, {"shape":"ValidationException"}, {"shape":"ConflictException"}, {"shape":"ResourceNotFoundException"}, {"shape":"AccessDeniedException"}, {"shape":"RequestTimeoutException"} ], "documentation":"Tags a resource.
", "endpoint":{"hostPrefix":"tags-"} }, "UntagResource":{ "name":"UntagResource", "http":{ "method":"DELETE", "requestUri":"/tags/{resourceArn}", "responseCode":204 }, "input":{"shape":"UntagResourceRequest"}, "output":{"shape":"UntagResourceResponse"}, "errors":[ {"shape":"InternalServerException"}, {"shape":"ServiceQuotaExceededException"}, {"shape":"ThrottlingException"}, {"shape":"ValidationException"}, {"shape":"ConflictException"}, {"shape":"ResourceNotFoundException"}, {"shape":"AccessDeniedException"}, {"shape":"RequestTimeoutException"} ], "documentation":"Removes tags from a resource.
", "endpoint":{"hostPrefix":"tags-"}, "idempotent":true }, "UpdateAnnotationStore":{ "name":"UpdateAnnotationStore", "http":{ "method":"POST", "requestUri":"/annotationStore/{name}", "responseCode":200 }, "input":{"shape":"UpdateAnnotationStoreRequest"}, "output":{"shape":"UpdateAnnotationStoreResponse"}, "errors":[ {"shape":"InternalServerException"}, {"shape":"ThrottlingException"}, {"shape":"ValidationException"}, {"shape":"ResourceNotFoundException"}, {"shape":"AccessDeniedException"} ], "documentation":"Updates an annotation store.
", "endpoint":{"hostPrefix":"analytics-"} }, "UpdateAnnotationStoreVersion":{ "name":"UpdateAnnotationStoreVersion", "http":{ "method":"POST", "requestUri":"/annotationStore/{name}/version/{versionName}", "responseCode":200 }, "input":{"shape":"UpdateAnnotationStoreVersionRequest"}, "output":{"shape":"UpdateAnnotationStoreVersionResponse"}, "errors":[ {"shape":"InternalServerException"}, {"shape":"ThrottlingException"}, {"shape":"ValidationException"}, {"shape":"ResourceNotFoundException"}, {"shape":"AccessDeniedException"} ], "documentation":"Updates the description of an annotation store version.
", "endpoint":{"hostPrefix":"analytics-"} }, "UpdateRunCache":{ "name":"UpdateRunCache", "http":{ "method":"POST", "requestUri":"/runCache/{id}", "responseCode":202 }, "input":{"shape":"UpdateRunCacheRequest"}, "errors":[ {"shape":"InternalServerException"}, {"shape":"ServiceQuotaExceededException"}, {"shape":"ThrottlingException"}, {"shape":"ValidationException"}, {"shape":"ConflictException"}, {"shape":"ResourceNotFoundException"}, {"shape":"AccessDeniedException"}, {"shape":"RequestTimeoutException"} ], "documentation":"Update a run cache.
", "endpoint":{"hostPrefix":"workflows-"} }, "UpdateRunGroup":{ "name":"UpdateRunGroup", "http":{ "method":"POST", "requestUri":"/runGroup/{id}", "responseCode":202 }, "input":{"shape":"UpdateRunGroupRequest"}, "errors":[ {"shape":"InternalServerException"}, {"shape":"ServiceQuotaExceededException"}, {"shape":"ThrottlingException"}, {"shape":"ValidationException"}, {"shape":"ConflictException"}, {"shape":"ResourceNotFoundException"}, {"shape":"AccessDeniedException"}, {"shape":"RequestTimeoutException"} ], "documentation":"Updates a run group.
", "endpoint":{"hostPrefix":"workflows-"} }, "UpdateSequenceStore":{ "name":"UpdateSequenceStore", "http":{ "method":"PATCH", "requestUri":"/sequencestore/{id}", "responseCode":200 }, "input":{"shape":"UpdateSequenceStoreRequest"}, "output":{"shape":"UpdateSequenceStoreResponse"}, "errors":[ {"shape":"InternalServerException"}, {"shape":"ThrottlingException"}, {"shape":"ValidationException"}, {"shape":"ConflictException"}, {"shape":"ResourceNotFoundException"}, {"shape":"AccessDeniedException"}, {"shape":"RequestTimeoutException"} ], "documentation":"Update one or more parameters for the sequence store.
", "endpoint":{"hostPrefix":"control-storage-"} }, "UpdateVariantStore":{ "name":"UpdateVariantStore", "http":{ "method":"POST", "requestUri":"/variantStore/{name}", "responseCode":200 }, "input":{"shape":"UpdateVariantStoreRequest"}, "output":{"shape":"UpdateVariantStoreResponse"}, "errors":[ {"shape":"InternalServerException"}, {"shape":"ThrottlingException"}, {"shape":"ValidationException"}, {"shape":"ResourceNotFoundException"}, {"shape":"AccessDeniedException"} ], "documentation":"Updates a variant store.
", "endpoint":{"hostPrefix":"analytics-"} }, "UpdateWorkflow":{ "name":"UpdateWorkflow", "http":{ "method":"POST", "requestUri":"/workflow/{id}", "responseCode":202 }, "input":{"shape":"UpdateWorkflowRequest"}, "errors":[ {"shape":"InternalServerException"}, {"shape":"ServiceQuotaExceededException"}, {"shape":"ThrottlingException"}, {"shape":"ValidationException"}, {"shape":"ConflictException"}, {"shape":"ResourceNotFoundException"}, {"shape":"AccessDeniedException"}, {"shape":"RequestTimeoutException"} ], "documentation":"Updates a workflow.
", "endpoint":{"hostPrefix":"workflows-"} }, "UploadReadSetPart":{ "name":"UploadReadSetPart", "http":{ "method":"PUT", "requestUri":"/sequencestore/{sequenceStoreId}/upload/{uploadId}/part", "responseCode":200 }, "input":{"shape":"UploadReadSetPartRequest"}, "output":{"shape":"UploadReadSetPartResponse"}, "errors":[ {"shape":"InternalServerException"}, {"shape":"NotSupportedOperationException"}, {"shape":"ServiceQuotaExceededException"}, {"shape":"ThrottlingException"}, {"shape":"ValidationException"}, {"shape":"ResourceNotFoundException"}, {"shape":"AccessDeniedException"}, {"shape":"RequestTimeoutException"} ], "documentation":"This operation uploads a specific part of a read set. If you upload a new part using a previously used part number, the previously uploaded part will be overwritten.
", "endpoint":{"hostPrefix":"storage-"}, "unsignedPayload":true, "authtype":"v4-unsigned-body" } }, "shapes":{ "AbortMultipartReadSetUploadRequest":{ "type":"structure", "required":[ "sequenceStoreId", "uploadId" ], "members":{ "sequenceStoreId":{ "shape":"SequenceStoreId", "documentation":"The sequence store ID for the store involved in the multipart upload.
", "location":"uri", "locationName":"sequenceStoreId" }, "uploadId":{ "shape":"UploadId", "documentation":"The ID for the multipart upload.
", "location":"uri", "locationName":"uploadId" } } }, "AbortMultipartReadSetUploadResponse":{ "type":"structure", "members":{ } }, "Accelerators":{ "type":"string", "enum":["GPU"], "max":64, "min":1 }, "AcceptShareRequest":{ "type":"structure", "required":["shareId"], "members":{ "shareId":{ "shape":"String", "documentation":"The ID of the resource share.
", "location":"uri", "locationName":"shareId" } } }, "AcceptShareResponse":{ "type":"structure", "members":{ "status":{ "shape":"ShareStatus", "documentation":"The status of the resource share.
" } } }, "AccessDeniedException":{ "type":"structure", "required":["message"], "members":{ "message":{"shape":"String"} }, "documentation":"You do not have sufficient access to perform this action.
", "error":{ "httpStatusCode":403, "senderFault":true }, "exception":true }, "AccessLogLocation":{ "type":"string", "pattern":"$|^s3://([a-z0-9][a-z0-9-.]{1,61}[a-z0-9])/?((.{1,800})/)?" }, "ActivateReadSetFilter":{ "type":"structure", "members":{ "status":{ "shape":"ReadSetActivationJobStatus", "documentation":"The filter's status.
" }, "createdAfter":{ "shape":"SyntheticTimestamp_date_time", "documentation":"The filter's start date.
" }, "createdBefore":{ "shape":"SyntheticTimestamp_date_time", "documentation":"The filter's end date.
" } }, "documentation":"A read set activation job filter.
" }, "ActivateReadSetJobItem":{ "type":"structure", "required":[ "id", "sequenceStoreId", "status", "creationTime" ], "members":{ "id":{ "shape":"ActivationJobId", "documentation":"The job's ID.
" }, "sequenceStoreId":{ "shape":"SequenceStoreId", "documentation":"The job's sequence store ID.
" }, "status":{ "shape":"ReadSetActivationJobStatus", "documentation":"The job's status.
" }, "creationTime":{ "shape":"SyntheticTimestamp_date_time", "documentation":"When the job was created.
" }, "completionTime":{ "shape":"SyntheticTimestamp_date_time", "documentation":"When the job completed.
" } }, "documentation":"A read set activation job.
" }, "ActivateReadSetJobList":{ "type":"list", "member":{"shape":"ActivateReadSetJobItem"} }, "ActivateReadSetSourceItem":{ "type":"structure", "required":[ "readSetId", "status" ], "members":{ "readSetId":{ "shape":"ReadSetId", "documentation":"The source's read set ID.
" }, "status":{ "shape":"ReadSetActivationJobItemStatus", "documentation":"The source's status.
" }, "statusMessage":{ "shape":"JobStatusMessage", "documentation":"The source's status message.
" } }, "documentation":"A source for a read set activation job.
" }, "ActivateReadSetSourceList":{ "type":"list", "member":{"shape":"ActivateReadSetSourceItem"} }, "ActivationJobId":{ "type":"string", "max":36, "min":10, "pattern":"[0-9]+" }, "AnnotationFieldMap":{ "type":"map", "key":{"shape":"AnnotationFieldMapKeyString"}, "value":{"shape":"AnnotationFieldMapValueString"} }, "AnnotationFieldMapKeyString":{ "type":"string", "max":21, "min":1 }, "AnnotationFieldMapValueString":{ "type":"string", "max":21, "min":1 }, "AnnotationImportItemDetail":{ "type":"structure", "required":[ "source", "jobStatus" ], "members":{ "source":{ "shape":"S3Uri", "documentation":"The source file's location in Amazon S3.
" }, "jobStatus":{ "shape":"JobStatus", "documentation":"The item's job status.
" } }, "documentation":"Details about an imported annotation item.
" }, "AnnotationImportItemDetails":{ "type":"list", "member":{"shape":"AnnotationImportItemDetail"}, "max":1, "min":1 }, "AnnotationImportItemSource":{ "type":"structure", "required":["source"], "members":{ "source":{ "shape":"S3Uri", "documentation":"The source file's location in Amazon S3.
" } }, "documentation":"A source for an annotation import job.
" }, "AnnotationImportItemSources":{ "type":"list", "member":{"shape":"AnnotationImportItemSource"}, "min":1 }, "AnnotationImportJobItem":{ "type":"structure", "required":[ "id", "destinationName", "versionName", "roleArn", "status", "creationTime", "updateTime" ], "members":{ "id":{ "shape":"String", "documentation":"The job's ID.
" }, "destinationName":{ "shape":"String", "documentation":"The job's destination annotation store.
" }, "versionName":{ "shape":"VersionName", "documentation":"The name of the annotation store version.
" }, "roleArn":{ "shape":"Arn", "documentation":"The job's service role ARN.
" }, "status":{ "shape":"JobStatus", "documentation":"The job's status.
" }, "creationTime":{ "shape":"CreationTime", "documentation":"When the job was created.
" }, "updateTime":{ "shape":"UpdateTime", "documentation":"When the job was updated.
" }, "completionTime":{ "shape":"CompletionTime", "documentation":"When the job completed.
" }, "runLeftNormalization":{ "shape":"RunLeftNormalization", "documentation":"The job's left normalization setting.
" }, "annotationFields":{ "shape":"AnnotationFieldMap", "documentation":"The annotation schema generated by the parsed annotation data.
" } }, "documentation":"An annotation import job.
" }, "AnnotationImportJobItems":{ "type":"list", "member":{"shape":"AnnotationImportJobItem"} }, "AnnotationStoreItem":{ "type":"structure", "required":[ "id", "reference", "status", "storeArn", "name", "storeFormat", "description", "sseConfig", "creationTime", "updateTime", "statusMessage", "storeSizeBytes" ], "members":{ "id":{ "shape":"ResourceId", "documentation":"The store's ID.
" }, "reference":{ "shape":"ReferenceItem", "documentation":"The store's genome reference.
" }, "status":{ "shape":"StoreStatus", "documentation":"The store's status.
" }, "storeArn":{ "shape":"Arn", "documentation":"The store's ARN.
" }, "name":{ "shape":"String", "documentation":"The store's name.
" }, "storeFormat":{ "shape":"StoreFormat", "documentation":"The store's file format.
" }, "description":{ "shape":"Description", "documentation":"The store's description.
" }, "sseConfig":{ "shape":"SseConfig", "documentation":"The store's server-side encryption (SSE) settings.
" }, "creationTime":{ "shape":"CreationTime", "documentation":"The store's creation time.
" }, "updateTime":{ "shape":"UpdateTime", "documentation":"When the store was updated.
" }, "statusMessage":{ "shape":"StatusMessage", "documentation":"The store's status message.
" }, "storeSizeBytes":{ "shape":"Long", "documentation":"The store's size in bytes.
" } }, "documentation":"An annotation store.
" }, "AnnotationStoreItems":{ "type":"list", "member":{"shape":"AnnotationStoreItem"} }, "AnnotationStoreVersionItem":{ "type":"structure", "required":[ "storeId", "id", "status", "versionArn", "name", "versionName", "description", "creationTime", "updateTime", "statusMessage", "versionSizeBytes" ], "members":{ "storeId":{ "shape":"ResourceId", "documentation":"The store ID for an annotation store version.
" }, "id":{ "shape":"ResourceId", "documentation":"The annotation store version ID.
" }, "status":{ "shape":"VersionStatus", "documentation":"The status of an annotation store version.
" }, "versionArn":{ "shape":"Arn", "documentation":"The Arn for an annotation store version.
" }, "name":{ "shape":"StoreName", "documentation":"A name given to an annotation store version to distinguish it from others.
" }, "versionName":{ "shape":"VersionName", "documentation":"The name of an annotation store version.
" }, "description":{ "shape":"Description", "documentation":"The description of an annotation store version.
" }, "creationTime":{ "shape":"CreationTime", "documentation":"The time stamp for when an annotation store version was created.
" }, "updateTime":{ "shape":"UpdateTime", "documentation":"The time stamp for when an annotation store version was updated.
" }, "statusMessage":{ "shape":"StatusMessage", "documentation":"The status of an annotation store version.
" }, "versionSizeBytes":{ "shape":"Long", "documentation":"The size of an annotation store version in Bytes.
" } }, "documentation":"Annotation store versions.
" }, "AnnotationStoreVersionItems":{ "type":"list", "member":{"shape":"AnnotationStoreVersionItem"} }, "AnnotationType":{ "type":"string", "enum":[ "GENERIC", "CHR_POS", "CHR_POS_REF_ALT", "CHR_START_END_ONE_BASE", "CHR_START_END_REF_ALT_ONE_BASE", "CHR_START_END_ZERO_BASE", "CHR_START_END_REF_ALT_ZERO_BASE" ] }, "Arn":{ "type":"string", "max":2048, "min":20, "pattern":"arn:([^: ]*):([^: ]*):([^: ]*):([0-9]{12}):([^: ]*)" }, "ArnList":{ "type":"list", "member":{"shape":"String"}, "max":10, "min":1 }, "AwsAccountId":{ "type":"string", "max":12, "min":12, "pattern":"[0-9]+" }, "BatchDeleteReadSetRequest":{ "type":"structure", "required":[ "ids", "sequenceStoreId" ], "members":{ "ids":{ "shape":"ReadSetIdList", "documentation":"The read sets' IDs.
" }, "sequenceStoreId":{ "shape":"SequenceStoreId", "documentation":"The read sets' sequence store ID.
", "location":"uri", "locationName":"sequenceStoreId" } } }, "BatchDeleteReadSetResponse":{ "type":"structure", "members":{ "errors":{ "shape":"ReadSetBatchErrorList", "documentation":"Errors returned by individual delete operations.
" } } }, "Blob":{"type":"blob"}, "Boolean":{ "type":"boolean", "box":true }, "CacheBehavior":{ "type":"string", "enum":[ "CACHE_ON_FAILURE", "CACHE_ALWAYS" ], "max":64, "min":1 }, "CancelAnnotationImportRequest":{ "type":"structure", "required":["jobId"], "members":{ "jobId":{ "shape":"ResourceId", "documentation":"The job's ID.
", "location":"uri", "locationName":"jobId" } } }, "CancelAnnotationImportResponse":{ "type":"structure", "members":{ } }, "CancelRunRequest":{ "type":"structure", "required":["id"], "members":{ "id":{ "shape":"RunId", "documentation":"The run's ID.
", "location":"uri", "locationName":"id" } } }, "CancelVariantImportRequest":{ "type":"structure", "required":["jobId"], "members":{ "jobId":{ "shape":"ResourceId", "documentation":"The job's ID.
", "location":"uri", "locationName":"jobId" } } }, "CancelVariantImportResponse":{ "type":"structure", "members":{ } }, "ClientToken":{ "type":"string", "max":127, "min":1, "pattern":"[\\p{L}||\\p{M}||\\p{Z}||\\p{S}||\\p{N}||\\p{P}]+" }, "CommentChar":{ "type":"string", "max":1, "min":1 }, "CompleteMultipartReadSetUploadRequest":{ "type":"structure", "required":[ "sequenceStoreId", "uploadId", "parts" ], "members":{ "sequenceStoreId":{ "shape":"SequenceStoreId", "documentation":"The sequence store ID for the store involved in the multipart upload.
", "location":"uri", "locationName":"sequenceStoreId" }, "uploadId":{ "shape":"UploadId", "documentation":"The ID for the multipart upload.
", "location":"uri", "locationName":"uploadId" }, "parts":{ "shape":"CompleteReadSetUploadPartList", "documentation":"The individual uploads or parts of a multipart upload.
" } } }, "CompleteMultipartReadSetUploadResponse":{ "type":"structure", "required":["readSetId"], "members":{ "readSetId":{ "shape":"ReadSetId", "documentation":"The read set ID created for an uploaded read set.
" } } }, "CompleteReadSetUploadPartList":{ "type":"list", "member":{"shape":"CompleteReadSetUploadPartListItem"} }, "CompleteReadSetUploadPartListItem":{ "type":"structure", "required":[ "partNumber", "partSource", "checksum" ], "members":{ "partNumber":{ "shape":"CompleteReadSetUploadPartListItemPartNumberInteger", "documentation":"A number identifying the part in a read set upload.
" }, "partSource":{ "shape":"ReadSetPartSource", "documentation":"The source file of the part being uploaded.
" }, "checksum":{ "shape":"CompleteReadSetUploadPartListItemChecksumString", "documentation":"A unique identifier used to confirm that parts are being added to the correct upload.
" } }, "documentation":"Part of the response to the CompleteReadSetUpload API, including metadata.
" }, "CompleteReadSetUploadPartListItemChecksumString":{ "type":"string", "max":100, "min":1, "pattern":"[\\p{L}||\\p{M}||\\p{Z}||\\p{S}||\\p{N}||\\p{P}]+" }, "CompleteReadSetUploadPartListItemPartNumberInteger":{ "type":"integer", "box":true, "max":10000, "min":1 }, "CompletionTime":{ "type":"timestamp", "timestampFormat":"iso8601" }, "ConflictException":{ "type":"structure", "required":["message"], "members":{ "message":{"shape":"String"} }, "documentation":"The request cannot be applied to the target resource in its current state.
", "error":{ "httpStatusCode":409, "senderFault":true }, "exception":true }, "CreateAnnotationStoreRequest":{ "type":"structure", "required":["storeFormat"], "members":{ "reference":{ "shape":"ReferenceItem", "documentation":"The genome reference for the store's annotations.
" }, "name":{ "shape":"StoreName", "documentation":"A name for the store.
" }, "description":{ "shape":"Description", "documentation":"A description for the store.
" }, "tags":{ "shape":"TagMap", "documentation":"Tags for the store.
" }, "versionName":{ "shape":"VersionName", "documentation":"The name given to an annotation store version to distinguish it from other versions.
" }, "sseConfig":{ "shape":"SseConfig", "documentation":"Server-side encryption (SSE) settings for the store.
" }, "storeFormat":{ "shape":"StoreFormat", "documentation":"The annotation file format of the store.
" }, "storeOptions":{ "shape":"StoreOptions", "documentation":"File parsing options for the annotation store.
" } } }, "CreateAnnotationStoreResponse":{ "type":"structure", "required":[ "id", "status", "name", "versionName", "creationTime" ], "members":{ "id":{ "shape":"ResourceId", "documentation":"The store's ID.
" }, "reference":{ "shape":"ReferenceItem", "documentation":"The store's genome reference. Required for all stores except TSV format with generic annotations.
" }, "storeFormat":{ "shape":"StoreFormat", "documentation":"The annotation file format of the store.
" }, "storeOptions":{ "shape":"StoreOptions", "documentation":"The store's file parsing options.
" }, "status":{ "shape":"StoreStatus", "documentation":"The store's status.
" }, "name":{ "shape":"String", "documentation":"The store's name.
" }, "versionName":{ "shape":"VersionName", "documentation":"The name given to an annotation store version to distinguish it from other versions.
" }, "creationTime":{ "shape":"CreationTime", "documentation":"When the store was created.
" } } }, "CreateAnnotationStoreVersionRequest":{ "type":"structure", "required":[ "name", "versionName" ], "members":{ "name":{ "shape":"StoreName", "documentation":"The name of an annotation store version from which versions are being created.
", "location":"uri", "locationName":"name" }, "versionName":{ "shape":"VersionName", "documentation":"The name given to an annotation store version to distinguish it from other versions.
" }, "description":{ "shape":"Description", "documentation":"The description of an annotation store version.
" }, "versionOptions":{ "shape":"VersionOptions", "documentation":"The options for an annotation store version.
" }, "tags":{ "shape":"TagMap", "documentation":"Any tags added to annotation store version.
" } } }, "CreateAnnotationStoreVersionResponse":{ "type":"structure", "required":[ "id", "versionName", "storeId", "name", "status", "creationTime" ], "members":{ "id":{ "shape":"ResourceId", "documentation":"A generated ID for the annotation store
" }, "versionName":{ "shape":"VersionName", "documentation":"The name given to an annotation store version to distinguish it from other versions.
" }, "storeId":{ "shape":"ResourceId", "documentation":"The ID for the annotation store from which new versions are being created.
" }, "versionOptions":{ "shape":"VersionOptions", "documentation":"The options for an annotation store version.
" }, "name":{ "shape":"StoreName", "documentation":"The name given to an annotation store version to distinguish it from other versions.
" }, "status":{ "shape":"VersionStatus", "documentation":"The status of a annotation store version.
" }, "creationTime":{ "shape":"CreationTime", "documentation":"The time stamp for the creation of an annotation store version.
" } } }, "CreateMultipartReadSetUploadRequest":{ "type":"structure", "required":[ "sequenceStoreId", "sourceFileType", "subjectId", "sampleId", "name" ], "members":{ "sequenceStoreId":{ "shape":"SequenceStoreId", "documentation":"The sequence store ID for the store that is the destination of the multipart uploads.
", "location":"uri", "locationName":"sequenceStoreId" }, "clientToken":{ "shape":"ClientToken", "documentation":"An idempotency token that can be used to avoid triggering multiple multipart uploads.
" }, "sourceFileType":{ "shape":"FileType", "documentation":"The type of file being uploaded.
" }, "subjectId":{ "shape":"SubjectId", "documentation":"The source's subject ID.
" }, "sampleId":{ "shape":"SampleId", "documentation":"The source's sample ID.
" }, "generatedFrom":{ "shape":"GeneratedFrom", "documentation":"Where the source originated.
" }, "referenceArn":{ "shape":"ReferenceArn", "documentation":"The ARN of the reference.
" }, "name":{ "shape":"ReadSetName", "documentation":"The name of the read set.
" }, "description":{ "shape":"ReadSetDescription", "documentation":"The description of the read set.
" }, "tags":{ "shape":"TagMap", "documentation":"Any tags to add to the read set.
" } } }, "CreateMultipartReadSetUploadResponse":{ "type":"structure", "required":[ "sequenceStoreId", "uploadId", "sourceFileType", "subjectId", "sampleId", "referenceArn", "creationTime" ], "members":{ "sequenceStoreId":{ "shape":"SequenceStoreId", "documentation":"The sequence store ID for the store that the read set will be created in.
" }, "uploadId":{ "shape":"UploadId", "documentation":"The ID for the initiated multipart upload.
" }, "sourceFileType":{ "shape":"FileType", "documentation":"The file type of the read set source.
" }, "subjectId":{ "shape":"SubjectId", "documentation":"The source's subject ID.
" }, "sampleId":{ "shape":"SampleId", "documentation":"The source's sample ID.
" }, "generatedFrom":{ "shape":"GeneratedFrom", "documentation":"The source of the read set.
" }, "referenceArn":{ "shape":"ReferenceArn", "documentation":"The read set source's reference ARN.
" }, "name":{ "shape":"ReadSetName", "documentation":"The name of the read set.
" }, "description":{ "shape":"ReadSetDescription", "documentation":"The description of the read set.
" }, "tags":{ "shape":"TagMap", "documentation":"The tags to add to the read set.
" }, "creationTime":{ "shape":"SyntheticTimestamp_date_time", "documentation":"The creation time of the multipart upload.
" } } }, "CreateReferenceStoreRequest":{ "type":"structure", "required":["name"], "members":{ "name":{ "shape":"ReferenceStoreName", "documentation":"A name for the store.
" }, "description":{ "shape":"ReferenceStoreDescription", "documentation":"A description for the store.
" }, "sseConfig":{ "shape":"SseConfig", "documentation":"Server-side encryption (SSE) settings for the store.
" }, "tags":{ "shape":"TagMap", "documentation":"Tags for the store.
" }, "clientToken":{ "shape":"ClientToken", "documentation":"To ensure that requests don't run multiple times, specify a unique token for each request.
" } } }, "CreateReferenceStoreResponse":{ "type":"structure", "required":[ "id", "arn", "creationTime" ], "members":{ "id":{ "shape":"ReferenceStoreId", "documentation":"The store's ID.
" }, "arn":{ "shape":"ReferenceStoreArn", "documentation":"The store's ARN.
" }, "name":{ "shape":"ReferenceStoreName", "documentation":"The store's name.
" }, "description":{ "shape":"ReferenceStoreDescription", "documentation":"The store's description.
" }, "sseConfig":{ "shape":"SseConfig", "documentation":"The store's SSE settings.
" }, "creationTime":{ "shape":"SyntheticTimestamp_date_time", "documentation":"When the store was created.
" } } }, "CreateRunCacheRequest":{ "type":"structure", "required":[ "cacheS3Location", "requestId" ], "members":{ "cacheBehavior":{ "shape":"CacheBehavior", "documentation":"Default cache behavior for runs that use this cache. Supported values are:
CACHE_ON_FAILURE: Caches task outputs from completed tasks for runs that fail. This setting is useful if you're debugging a workflow that fails after several tasks completed successfully. The subsequent run uses the cache outputs for previously-completed tasks if the task definition, inputs, and container in ECR are identical to the prior run.
CACHE_ALWAYS: Caches task outputs from completed tasks for all runs. This setting is useful in development mode, but do not use it in a production setting.
If you don't specify a value, the default behavior is CACHE_ON_FAILURE. When you start a run that uses this cache, you can override the default cache behavior.
For more information, see Run cache behavior in the AWS HealthOmics User Guide.
" }, "cacheS3Location":{ "shape":"S3UriForBucketOrObject", "documentation":"Specify the S3 location for storing the cached task outputs. This data must be immediately accessible (not in an archived state).
" }, "description":{ "shape":"UserCustomDescription", "documentation":"Enter a description of the run cache.
" }, "name":{ "shape":"UserCustomName", "documentation":"Enter a user-friendly name for the run cache.
" }, "requestId":{ "shape":"RunCacheRequestId", "documentation":"A unique request token, to ensure idempotency. If you don't specify a token, HealthOmics automatically generates a universally unique identifier (UUID) for the request.
", "idempotencyToken":true }, "tags":{ "shape":"TagMap", "documentation":"Specify one or more tags to associate with this run cache.
" }, "cacheBucketOwnerId":{ "shape":"AwsAccountId", "documentation":"The AWS account ID of the expected owner of the S3 bucket for the run cache. If not provided, your account ID is set as the owner of the bucket.
" } } }, "CreateRunCacheResponse":{ "type":"structure", "members":{ "arn":{ "shape":"RunCacheArn", "documentation":"Unique resource identifier for the run cache.
" }, "id":{ "shape":"RunCacheId", "documentation":"Identifier for the run cache.
" }, "status":{ "shape":"RunCacheStatus", "documentation":"Run cache status.
" }, "tags":{ "shape":"TagMap", "documentation":"The tags associated with this run cache.
" } } }, "CreateRunGroupRequest":{ "type":"structure", "required":["requestId"], "members":{ "name":{ "shape":"RunGroupName", "documentation":"A name for the group.
" }, "maxCpus":{ "shape":"CreateRunGroupRequestMaxCpusInteger", "documentation":"The maximum number of CPUs that can run concurrently across all active runs in the run group.
" }, "maxRuns":{ "shape":"CreateRunGroupRequestMaxRunsInteger", "documentation":"The maximum number of runs that can be running at the same time.
" }, "maxDuration":{ "shape":"CreateRunGroupRequestMaxDurationInteger", "documentation":"The maximum time for each run (in minutes). If a run exceeds the maximum run time, the run fails automatically.
" }, "tags":{ "shape":"TagMap", "documentation":"Tags for the group.
" }, "requestId":{ "shape":"RunGroupRequestId", "documentation":"To ensure that requests don't run multiple times, specify a unique ID for each request.
", "idempotencyToken":true }, "maxGpus":{ "shape":"CreateRunGroupRequestMaxGpusInteger", "documentation":"The maximum number of GPUs that can run concurrently across all active runs in the run group.
" } } }, "CreateRunGroupRequestMaxCpusInteger":{ "type":"integer", "box":true, "max":100000, "min":1 }, "CreateRunGroupRequestMaxDurationInteger":{ "type":"integer", "box":true, "max":100000, "min":1 }, "CreateRunGroupRequestMaxGpusInteger":{ "type":"integer", "box":true, "max":100000, "min":1 }, "CreateRunGroupRequestMaxRunsInteger":{ "type":"integer", "box":true, "max":100000, "min":1 }, "CreateRunGroupResponse":{ "type":"structure", "members":{ "arn":{ "shape":"RunGroupArn", "documentation":"The group's ARN.
" }, "id":{ "shape":"RunGroupId", "documentation":"The group's ID.
" }, "tags":{ "shape":"TagMap", "documentation":"Tags for the run group.
" } } }, "CreateSequenceStoreRequest":{ "type":"structure", "required":["name"], "members":{ "name":{ "shape":"SequenceStoreName", "documentation":"A name for the store.
" }, "description":{ "shape":"SequenceStoreDescription", "documentation":"A description for the store.
" }, "sseConfig":{ "shape":"SseConfig", "documentation":"Server-side encryption (SSE) settings for the store.
" }, "tags":{ "shape":"TagMap", "documentation":"Tags for the store.
" }, "clientToken":{ "shape":"ClientToken", "documentation":"To ensure that requests don't run multiple times, specify a unique token for each request.
", "idempotencyToken":true }, "fallbackLocation":{ "shape":"S3Destination", "documentation":"An S3 location that is used to store files that have failed a direct upload.
" }, "eTagAlgorithmFamily":{ "shape":"ETagAlgorithmFamily", "documentation":"The ETag algorithm family to use for ingested read sets.
" }, "propagatedSetLevelTags":{ "shape":"PropagatedSetLevelTags", "documentation":"The tags keys to propagate to the S3 objects associated with read sets in the sequence store.
" }, "s3AccessConfig":{ "shape":"S3AccessConfig", "documentation":"S3 access configuration parameters
" } } }, "CreateSequenceStoreResponse":{ "type":"structure", "required":[ "id", "arn", "creationTime" ], "members":{ "id":{ "shape":"SequenceStoreId", "documentation":"The store's ID.
" }, "arn":{ "shape":"SequenceStoreArn", "documentation":"The store's ARN.
" }, "name":{ "shape":"SequenceStoreName", "documentation":"The store's name.
" }, "description":{ "shape":"SequenceStoreDescription", "documentation":"The store's description.
" }, "sseConfig":{ "shape":"SseConfig", "documentation":"The store's SSE settings.
" }, "creationTime":{ "shape":"SyntheticTimestamp_date_time", "documentation":"When the store was created.
" }, "fallbackLocation":{ "shape":"S3Destination", "documentation":"An S3 location that is used to store files that have failed a direct upload.
" }, "eTagAlgorithmFamily":{ "shape":"ETagAlgorithmFamily", "documentation":"The algorithm family of the ETag.
" }, "status":{ "shape":"SequenceStoreStatus", "documentation":"The status of the sequence store.
" }, "statusMessage":{ "shape":"SequenceStoreStatusMessage", "documentation":"The status message of the sequence store.
" }, "propagatedSetLevelTags":{ "shape":"PropagatedSetLevelTags", "documentation":"The tags keys to propagate to the S3 objects associated with read sets in the sequence store.
" }, "s3Access":{"shape":"SequenceStoreS3Access"} } }, "CreateShareRequest":{ "type":"structure", "required":[ "resourceArn", "principalSubscriber" ], "members":{ "resourceArn":{ "shape":"String", "documentation":"The ARN of the resource to be shared.
" }, "principalSubscriber":{ "shape":"String", "documentation":"The principal subscriber is the account being offered shared access to the resource.
" }, "shareName":{ "shape":"ShareName", "documentation":"A name that the owner defines for the share.
" } } }, "CreateShareResponse":{ "type":"structure", "members":{ "shareId":{ "shape":"String", "documentation":"The ID that HealthOmics generates for the share.
" }, "status":{ "shape":"ShareStatus", "documentation":"The status of the share.
" }, "shareName":{ "shape":"ShareName", "documentation":"The name of the share.
" } } }, "CreateVariantStoreRequest":{ "type":"structure", "required":["reference"], "members":{ "reference":{ "shape":"ReferenceItem", "documentation":"The genome reference for the store's variants.
" }, "name":{ "shape":"StoreName", "documentation":"A name for the store.
" }, "description":{ "shape":"Description", "documentation":"A description for the store.
" }, "tags":{ "shape":"TagMap", "documentation":"Tags for the store.
" }, "sseConfig":{ "shape":"SseConfig", "documentation":"Server-side encryption (SSE) settings for the store.
" } } }, "CreateVariantStoreResponse":{ "type":"structure", "required":[ "id", "status", "name", "creationTime" ], "members":{ "id":{ "shape":"ResourceId", "documentation":"The store's ID.
" }, "reference":{ "shape":"ReferenceItem", "documentation":"The store's genome reference.
" }, "status":{ "shape":"StoreStatus", "documentation":"The store's status.
" }, "name":{ "shape":"String", "documentation":"The store's name.
" }, "creationTime":{ "shape":"CreationTime", "documentation":"When the store was created.
" } } }, "CreateWorkflowRequest":{ "type":"structure", "required":["requestId"], "members":{ "name":{ "shape":"WorkflowName", "documentation":"A name for the workflow.
" }, "description":{ "shape":"WorkflowDescription", "documentation":"A description for the workflow.
" }, "engine":{ "shape":"WorkflowEngine", "documentation":"An engine for the workflow.
" }, "definitionZip":{ "shape":"Blob", "documentation":"A ZIP archive for the workflow.
" }, "definitionUri":{ "shape":"WorkflowDefinition", "documentation":"The URI of a definition for the workflow.
" }, "main":{ "shape":"WorkflowMain", "documentation":"The path of the main definition file for the workflow.
" }, "parameterTemplate":{ "shape":"WorkflowParameterTemplate", "documentation":"A parameter template for the workflow.
" }, "storageCapacity":{ "shape":"CreateWorkflowRequestStorageCapacityInteger", "documentation":"The default storage capacity for the workflow runs, in gibibytes.
" }, "tags":{ "shape":"TagMap", "documentation":"Tags for the workflow.
" }, "requestId":{ "shape":"WorkflowRequestId", "documentation":"To ensure that requests don't run multiple times, specify a unique ID for each request.
", "idempotencyToken":true }, "accelerators":{ "shape":"Accelerators", "documentation":"The computational accelerator specified to run the workflow.
" } } }, "CreateWorkflowRequestStorageCapacityInteger":{ "type":"integer", "box":true, "max":100000, "min":0 }, "CreateWorkflowResponse":{ "type":"structure", "members":{ "arn":{ "shape":"WorkflowArn", "documentation":"The workflow's ARN.
" }, "id":{ "shape":"WorkflowId", "documentation":"The workflow's ID.
" }, "status":{ "shape":"WorkflowStatus", "documentation":"The workflow's status.
" }, "tags":{ "shape":"TagMap", "documentation":"The workflow's tags.
" } } }, "CreationJobId":{ "type":"string", "max":127, "min":1, "pattern":"[a-zA-Z0-9]+" }, "CreationTime":{ "type":"timestamp", "timestampFormat":"iso8601" }, "CreationType":{ "type":"string", "enum":[ "IMPORT", "UPLOAD" ] }, "DeleteAnnotationStoreRequest":{ "type":"structure", "required":["name"], "members":{ "name":{ "shape":"String", "documentation":"The store's name.
", "location":"uri", "locationName":"name" }, "force":{ "shape":"PrimitiveBoolean", "documentation":"Whether to force deletion.
", "location":"querystring", "locationName":"force" } } }, "DeleteAnnotationStoreResponse":{ "type":"structure", "required":["status"], "members":{ "status":{ "shape":"StoreStatus", "documentation":"The store's status.
" } } }, "DeleteAnnotationStoreVersionsRequest":{ "type":"structure", "required":[ "name", "versions" ], "members":{ "name":{ "shape":"String", "documentation":"The name of the annotation store from which versions are being deleted.
", "location":"uri", "locationName":"name" }, "versions":{ "shape":"VersionList", "documentation":"The versions of an annotation store to be deleted.
" }, "force":{ "shape":"PrimitiveBoolean", "documentation":"Forces the deletion of an annotation store version when imports are in-progress..
", "location":"querystring", "locationName":"force" } } }, "DeleteAnnotationStoreVersionsResponse":{ "type":"structure", "members":{ "errors":{ "shape":"VersionDeleteErrorList", "documentation":"Any errors that occur when attempting to delete an annotation store version.
" } } }, "DeleteReferenceRequest":{ "type":"structure", "required":[ "id", "referenceStoreId" ], "members":{ "id":{ "shape":"ReferenceId", "documentation":"The reference's ID.
", "location":"uri", "locationName":"id" }, "referenceStoreId":{ "shape":"ReferenceStoreId", "documentation":"The reference's store ID.
", "location":"uri", "locationName":"referenceStoreId" } } }, "DeleteReferenceResponse":{ "type":"structure", "members":{ } }, "DeleteReferenceStoreRequest":{ "type":"structure", "required":["id"], "members":{ "id":{ "shape":"ReferenceStoreId", "documentation":"The store's ID.
", "location":"uri", "locationName":"id" } } }, "DeleteReferenceStoreResponse":{ "type":"structure", "members":{ } }, "DeleteRunCacheRequest":{ "type":"structure", "required":["id"], "members":{ "id":{ "shape":"RunCacheId", "documentation":"Run cache identifier for the cache you want to delete.
", "location":"uri", "locationName":"id" } } }, "DeleteRunGroupRequest":{ "type":"structure", "required":["id"], "members":{ "id":{ "shape":"RunGroupId", "documentation":"The run group's ID.
", "location":"uri", "locationName":"id" } } }, "DeleteRunRequest":{ "type":"structure", "required":["id"], "members":{ "id":{ "shape":"RunId", "documentation":"The run's ID.
", "location":"uri", "locationName":"id" } } }, "DeleteS3AccessPolicyRequest":{ "type":"structure", "required":["s3AccessPointArn"], "members":{ "s3AccessPointArn":{ "shape":"S3AccessPointArn", "documentation":"The S3 access point ARN that has the access policy.
", "location":"uri", "locationName":"s3AccessPointArn" } } }, "DeleteS3AccessPolicyResponse":{ "type":"structure", "members":{ } }, "DeleteSequenceStoreRequest":{ "type":"structure", "required":["id"], "members":{ "id":{ "shape":"SequenceStoreId", "documentation":"The sequence store's ID.
", "location":"uri", "locationName":"id" } } }, "DeleteSequenceStoreResponse":{ "type":"structure", "members":{ } }, "DeleteShareRequest":{ "type":"structure", "required":["shareId"], "members":{ "shareId":{ "shape":"String", "documentation":"The ID for the resource share to be deleted.
", "location":"uri", "locationName":"shareId" } } }, "DeleteShareResponse":{ "type":"structure", "members":{ "status":{ "shape":"ShareStatus", "documentation":"The status of the share being deleted.
" } } }, "DeleteVariantStoreRequest":{ "type":"structure", "required":["name"], "members":{ "name":{ "shape":"String", "documentation":"The store's name.
", "location":"uri", "locationName":"name" }, "force":{ "shape":"PrimitiveBoolean", "documentation":"Whether to force deletion.
", "location":"querystring", "locationName":"force" } } }, "DeleteVariantStoreResponse":{ "type":"structure", "required":["status"], "members":{ "status":{ "shape":"StoreStatus", "documentation":"The store's status.
" } } }, "DeleteWorkflowRequest":{ "type":"structure", "required":["id"], "members":{ "id":{ "shape":"WorkflowId", "documentation":"The workflow's ID.
", "location":"uri", "locationName":"id" } } }, "Description":{ "type":"string", "max":500, "min":0 }, "ETag":{ "type":"structure", "members":{ "algorithm":{ "shape":"ETagAlgorithm", "documentation":"The algorithm used to calculate the read set’s ETag(s).
" }, "source1":{ "shape":"String", "documentation":"The ETag hash calculated on Source1 of the read set.
" }, "source2":{ "shape":"String", "documentation":"The ETag hash calculated on Source2 of the read set.
" } }, "documentation":"The entity tag (ETag) is a hash of the object representing its semantic content.
" }, "ETagAlgorithm":{ "type":"string", "enum":[ "FASTQ_MD5up", "BAM_MD5up", "CRAM_MD5up", "FASTQ_SHA256up", "BAM_SHA256up", "CRAM_SHA256up", "FASTQ_SHA512up", "BAM_SHA512up", "CRAM_SHA512up" ] }, "ETagAlgorithmFamily":{ "type":"string", "enum":[ "MD5up", "SHA256up", "SHA512up" ] }, "Encoding":{ "type":"string", "max":20, "min":1 }, "EncryptionType":{ "type":"string", "enum":["KMS"] }, "EngineLogStream":{ "type":"string", "pattern":"[\\p{L}||\\p{M}||\\p{Z}||\\p{S}||\\p{N}||\\p{P}]+" }, "EngineVersion":{ "type":"string", "pattern":"[0-9]{2}.[0-9]{2}.[0-9]" }, "EscapeChar":{ "type":"string", "max":1, "min":1 }, "EscapeQuotes":{"type":"boolean"}, "ExportJobId":{ "type":"string", "max":36, "min":10, "pattern":"[0-9]+" }, "ExportReadSet":{ "type":"structure", "required":["readSetId"], "members":{ "readSetId":{ "shape":"ReadSetId", "documentation":"The set's ID.
" } }, "documentation":"A read set.
" }, "ExportReadSetDetail":{ "type":"structure", "required":[ "id", "status" ], "members":{ "id":{ "shape":"ReadSetId", "documentation":"The set's ID.
" }, "status":{ "shape":"ReadSetExportJobItemStatus", "documentation":"The set's status.
" }, "statusMessage":{ "shape":"JobStatusMessage", "documentation":"The set's status message.
" } }, "documentation":"Details about a read set.
" }, "ExportReadSetDetailList":{ "type":"list", "member":{"shape":"ExportReadSetDetail"} }, "ExportReadSetFilter":{ "type":"structure", "members":{ "status":{ "shape":"ReadSetExportJobStatus", "documentation":"A status to filter on.
" }, "createdAfter":{ "shape":"SyntheticTimestamp_date_time", "documentation":"The filter's start date.
" }, "createdBefore":{ "shape":"SyntheticTimestamp_date_time", "documentation":"The filter's end date.
" } }, "documentation":"An read set export job filter.
" }, "ExportReadSetJobDetail":{ "type":"structure", "required":[ "id", "sequenceStoreId", "destination", "status", "creationTime" ], "members":{ "id":{ "shape":"ExportJobId", "documentation":"The job's ID.
" }, "sequenceStoreId":{ "shape":"SequenceStoreId", "documentation":"The job's sequence store ID.
" }, "destination":{ "shape":"S3Destination", "documentation":"The job's destination in Amazon S3.
" }, "status":{ "shape":"ReadSetExportJobStatus", "documentation":"The job's status.
" }, "creationTime":{ "shape":"SyntheticTimestamp_date_time", "documentation":"When the job was created.
" }, "completionTime":{ "shape":"SyntheticTimestamp_date_time", "documentation":"When the job completed.
" } }, "documentation":"Details about a read set export job.
" }, "ExportReadSetJobDetailList":{ "type":"list", "member":{"shape":"ExportReadSetJobDetail"} }, "FileInformation":{ "type":"structure", "members":{ "totalParts":{ "shape":"FileInformationTotalPartsInteger", "documentation":"The file's total parts.
" }, "partSize":{ "shape":"FileInformationPartSizeLong", "documentation":"The file's part size.
" }, "contentLength":{ "shape":"FileInformationContentLengthLong", "documentation":"The file's content length.
" }, "s3Access":{ "shape":"ReadSetS3Access", "documentation":"The S3 URI metadata of a sequence store.
" } }, "documentation":"Details about a file.
" }, "FileInformationContentLengthLong":{ "type":"long", "box":true, "max":5497558138880, "min":1 }, "FileInformationPartSizeLong":{ "type":"long", "box":true, "max":5368709120, "min":1 }, "FileInformationTotalPartsInteger":{ "type":"integer", "box":true, "max":10000, "min":1 }, "FileType":{ "type":"string", "enum":[ "FASTQ", "BAM", "CRAM", "UBAM" ] }, "Filter":{ "type":"structure", "members":{ "resourceArns":{ "shape":"ArnList", "documentation":"Filter based on the Amazon Resource Number (ARN) of the resource. You can specify up to 10 values.
" }, "status":{ "shape":"StatusList", "documentation":"Filter based on the resource status. You can specify up to 10 values.
" }, "type":{ "shape":"TypeList", "documentation":"The type of resources to be filtered. You can specify one or more of the resource types.
" } }, "documentation":"Use filters to return a subset of resources. You can define filters for specific parameters, such as the resource status.
" }, "FormatOptions":{ "type":"structure", "members":{ "tsvOptions":{ "shape":"TsvOptions", "documentation":"Options for a TSV file.
" }, "vcfOptions":{ "shape":"VcfOptions", "documentation":"Options for a VCF file.
" } }, "documentation":"Formatting options for a file.
", "union":true }, "FormatToHeader":{ "type":"map", "key":{"shape":"FormatToHeaderKey"}, "value":{"shape":"FormatToHeaderValueString"} }, "FormatToHeaderKey":{ "type":"string", "enum":[ "CHR", "START", "END", "REF", "ALT", "POS" ] }, "FormatToHeaderValueString":{ "type":"string", "max":1000, "min":0 }, "GeneratedFrom":{ "type":"string", "max":127, "min":1, "pattern":"[\\p{L}||\\p{M}||\\p{Z}||\\p{S}||\\p{N}||\\p{P}]+" }, "GetAnnotationImportRequest":{ "type":"structure", "required":["jobId"], "members":{ "jobId":{ "shape":"ResourceId", "documentation":"The job's ID.
", "location":"uri", "locationName":"jobId" } } }, "GetAnnotationImportResponse":{ "type":"structure", "required":[ "id", "destinationName", "versionName", "roleArn", "status", "statusMessage", "creationTime", "updateTime", "completionTime", "items", "runLeftNormalization", "formatOptions" ], "members":{ "id":{ "shape":"ResourceId", "documentation":"The job's ID.
" }, "destinationName":{ "shape":"StoreName", "documentation":"The job's destination annotation store.
" }, "versionName":{ "shape":"VersionName", "documentation":"The name of the annotation store version.
" }, "roleArn":{ "shape":"Arn", "documentation":"The job's service role ARN.
" }, "status":{ "shape":"JobStatus", "documentation":"The job's status.
" }, "statusMessage":{ "shape":"JobStatusMsg", "documentation":"The job's status message.
" }, "creationTime":{ "shape":"CreationTime", "documentation":"When the job was created.
" }, "updateTime":{ "shape":"UpdateTime", "documentation":"When the job was updated.
" }, "completionTime":{ "shape":"CompletionTime", "documentation":"When the job completed.
" }, "items":{ "shape":"AnnotationImportItemDetails", "documentation":"The job's imported items.
" }, "runLeftNormalization":{ "shape":"RunLeftNormalization", "documentation":"The job's left normalization setting.
" }, "formatOptions":{"shape":"FormatOptions"}, "annotationFields":{ "shape":"AnnotationFieldMap", "documentation":"The annotation schema generated by the parsed annotation data.
" } } }, "GetAnnotationStoreRequest":{ "type":"structure", "required":["name"], "members":{ "name":{ "shape":"String", "documentation":"The store's name.
", "location":"uri", "locationName":"name" } } }, "GetAnnotationStoreResponse":{ "type":"structure", "required":[ "id", "reference", "status", "storeArn", "name", "description", "sseConfig", "creationTime", "updateTime", "tags", "statusMessage", "storeSizeBytes", "numVersions" ], "members":{ "id":{ "shape":"ResourceId", "documentation":"The store's ID.
" }, "reference":{ "shape":"ReferenceItem", "documentation":"The store's genome reference.
" }, "status":{ "shape":"StoreStatus", "documentation":"The store's status.
" }, "storeArn":{ "shape":"Arn", "documentation":"The store's ARN.
" }, "name":{ "shape":"String", "documentation":"The store's name.
" }, "description":{ "shape":"Description", "documentation":"The store's description.
" }, "sseConfig":{ "shape":"SseConfig", "documentation":"The store's server-side encryption (SSE) settings.
" }, "creationTime":{ "shape":"CreationTime", "documentation":"When the store was created.
" }, "updateTime":{ "shape":"UpdateTime", "documentation":"When the store was updated.
" }, "tags":{ "shape":"TagMap", "documentation":"The store's tags.
" }, "storeOptions":{ "shape":"StoreOptions", "documentation":"The store's parsing options.
" }, "storeFormat":{ "shape":"StoreFormat", "documentation":"The store's annotation file format.
" }, "statusMessage":{ "shape":"StatusMessage", "documentation":"A status message.
" }, "storeSizeBytes":{ "shape":"Long", "documentation":"The store's size in bytes.
" }, "numVersions":{ "shape":"Integer", "documentation":"An integer indicating how many versions of an annotation store exist.
" } } }, "GetAnnotationStoreVersionRequest":{ "type":"structure", "required":[ "name", "versionName" ], "members":{ "name":{ "shape":"String", "documentation":"The name given to an annotation store version to distinguish it from others.
", "location":"uri", "locationName":"name" }, "versionName":{ "shape":"String", "documentation":"The name given to an annotation store version to distinguish it from others.
", "location":"uri", "locationName":"versionName" } } }, "GetAnnotationStoreVersionResponse":{ "type":"structure", "required":[ "storeId", "id", "status", "versionArn", "name", "versionName", "description", "creationTime", "updateTime", "tags", "statusMessage", "versionSizeBytes" ], "members":{ "storeId":{ "shape":"ResourceId", "documentation":"The store ID for annotation store version.
" }, "id":{ "shape":"ResourceId", "documentation":"The annotation store version ID.
" }, "status":{ "shape":"VersionStatus", "documentation":"The status of an annotation store version.
" }, "versionArn":{ "shape":"Arn", "documentation":"The Arn for the annotation store.
" }, "name":{ "shape":"StoreName", "documentation":"The name of the annotation store.
" }, "versionName":{ "shape":"VersionName", "documentation":"The name given to an annotation store version to distinguish it from others.
" }, "description":{ "shape":"Description", "documentation":"The description for an annotation store version.
" }, "creationTime":{ "shape":"CreationTime", "documentation":"The time stamp for when an annotation store version was created.
" }, "updateTime":{ "shape":"UpdateTime", "documentation":"The time stamp for when an annotation store version was updated.
" }, "tags":{ "shape":"TagMap", "documentation":"Any tags associated with an annotation store version.
" }, "versionOptions":{ "shape":"VersionOptions", "documentation":"The options for an annotation store version.
" }, "statusMessage":{ "shape":"StatusMessage", "documentation":"The status of an annotation store version.
" }, "versionSizeBytes":{ "shape":"Long", "documentation":"The size of the annotation store version in Bytes.
" } } }, "GetReadSetActivationJobRequest":{ "type":"structure", "required":[ "id", "sequenceStoreId" ], "members":{ "id":{ "shape":"ActivationJobId", "documentation":"The job's ID.
", "location":"uri", "locationName":"id" }, "sequenceStoreId":{ "shape":"SequenceStoreId", "documentation":"The job's sequence store ID.
", "location":"uri", "locationName":"sequenceStoreId" } } }, "GetReadSetActivationJobResponse":{ "type":"structure", "required":[ "id", "sequenceStoreId", "status", "creationTime" ], "members":{ "id":{ "shape":"ActivationJobId", "documentation":"The job's ID.
" }, "sequenceStoreId":{ "shape":"SequenceStoreId", "documentation":"The job's sequence store ID.
" }, "status":{ "shape":"ReadSetActivationJobStatus", "documentation":"The job's status.
" }, "statusMessage":{ "shape":"JobStatusMessage", "documentation":"The job's status message.
" }, "creationTime":{ "shape":"SyntheticTimestamp_date_time", "documentation":"When the job was created.
" }, "completionTime":{ "shape":"SyntheticTimestamp_date_time", "documentation":"When the job completed.
" }, "sources":{ "shape":"ActivateReadSetSourceList", "documentation":"The job's source files.
" } } }, "GetReadSetExportJobRequest":{ "type":"structure", "required":[ "sequenceStoreId", "id" ], "members":{ "sequenceStoreId":{ "shape":"SequenceStoreId", "documentation":"The job's sequence store ID.
", "location":"uri", "locationName":"sequenceStoreId" }, "id":{ "shape":"ExportJobId", "documentation":"The job's ID.
", "location":"uri", "locationName":"id" } } }, "GetReadSetExportJobResponse":{ "type":"structure", "required":[ "id", "sequenceStoreId", "destination", "status", "creationTime" ], "members":{ "id":{ "shape":"ExportJobId", "documentation":"The job's ID.
" }, "sequenceStoreId":{ "shape":"SequenceStoreId", "documentation":"The job's sequence store ID.
" }, "destination":{ "shape":"S3Destination", "documentation":"The job's destination in Amazon S3.
" }, "status":{ "shape":"ReadSetExportJobStatus", "documentation":"The job's status.
" }, "statusMessage":{ "shape":"JobStatusMessage", "documentation":"The job's status message.
" }, "creationTime":{ "shape":"SyntheticTimestamp_date_time", "documentation":"When the job was created.
" }, "completionTime":{ "shape":"SyntheticTimestamp_date_time", "documentation":"When the job completed.
" }, "readSets":{ "shape":"ExportReadSetDetailList", "documentation":"The job's read sets.
" } } }, "GetReadSetImportJobRequest":{ "type":"structure", "required":[ "id", "sequenceStoreId" ], "members":{ "id":{ "shape":"ImportJobId", "documentation":"The job's ID.
", "location":"uri", "locationName":"id" }, "sequenceStoreId":{ "shape":"SequenceStoreId", "documentation":"The job's sequence store ID.
", "location":"uri", "locationName":"sequenceStoreId" } } }, "GetReadSetImportJobResponse":{ "type":"structure", "required":[ "id", "sequenceStoreId", "roleArn", "status", "creationTime", "sources" ], "members":{ "id":{ "shape":"ImportJobId", "documentation":"The job's ID.
" }, "sequenceStoreId":{ "shape":"SequenceStoreId", "documentation":"The job's sequence store ID.
" }, "roleArn":{ "shape":"RoleArn", "documentation":"The job's service role ARN.
" }, "status":{ "shape":"ReadSetImportJobStatus", "documentation":"The job's status.
" }, "statusMessage":{ "shape":"JobStatusMessage", "documentation":"The job's status message.
" }, "creationTime":{ "shape":"SyntheticTimestamp_date_time", "documentation":"When the job was created.
" }, "completionTime":{ "shape":"SyntheticTimestamp_date_time", "documentation":"When the job completed.
" }, "sources":{ "shape":"ImportReadSetSourceList", "documentation":"The job's source files.
" } } }, "GetReadSetMetadataRequest":{ "type":"structure", "required":[ "id", "sequenceStoreId" ], "members":{ "id":{ "shape":"ReadSetId", "documentation":"The read set's ID.
", "location":"uri", "locationName":"id" }, "sequenceStoreId":{ "shape":"SequenceStoreId", "documentation":"The read set's sequence store ID.
", "location":"uri", "locationName":"sequenceStoreId" } } }, "GetReadSetMetadataResponse":{ "type":"structure", "required":[ "id", "arn", "sequenceStoreId", "status", "fileType", "creationTime" ], "members":{ "id":{ "shape":"ReadSetId", "documentation":"The read set's ID.
" }, "arn":{ "shape":"ReadSetArn", "documentation":"The read set's ARN.
" }, "sequenceStoreId":{ "shape":"SequenceStoreId", "documentation":"The read set's sequence store ID.
" }, "subjectId":{ "shape":"SubjectId", "documentation":"The read set's subject ID.
" }, "sampleId":{ "shape":"SampleId", "documentation":"The read set's sample ID.
" }, "status":{ "shape":"ReadSetStatus", "documentation":"The read set's status.
" }, "name":{ "shape":"ReadSetName", "documentation":"The read set's name.
" }, "description":{ "shape":"ReadSetDescription", "documentation":"The read set's description.
" }, "fileType":{ "shape":"FileType", "documentation":"The read set's file type.
" }, "creationTime":{ "shape":"SyntheticTimestamp_date_time", "documentation":"When the read set was created.
" }, "sequenceInformation":{ "shape":"SequenceInformation", "documentation":"The read set's sequence information.
" }, "referenceArn":{ "shape":"ReferenceArn", "documentation":"The read set's genome reference ARN.
" }, "files":{ "shape":"ReadSetFiles", "documentation":"The read set's files.
" }, "statusMessage":{ "shape":"ReadSetStatusMessage", "documentation":"The status message for a read set. It provides more detail as to why the read set has a status.
" }, "creationType":{ "shape":"CreationType", "documentation":"The creation type of the read set.
" }, "etag":{ "shape":"ETag", "documentation":"The entity tag (ETag) is a hash of the object meant to represent its semantic content.
" }, "creationJobId":{ "shape":"CreationJobId", "documentation":"The read set's creation job ID.
" } } }, "GetReadSetRequest":{ "type":"structure", "required":[ "id", "sequenceStoreId", "partNumber" ], "members":{ "id":{ "shape":"ReadSetId", "documentation":"The read set's ID.
", "location":"uri", "locationName":"id" }, "sequenceStoreId":{ "shape":"SequenceStoreId", "documentation":"The read set's sequence store ID.
", "location":"uri", "locationName":"sequenceStoreId" }, "file":{ "shape":"ReadSetFile", "documentation":"The file to retrieve.
", "location":"querystring", "locationName":"file" }, "partNumber":{ "shape":"GetReadSetRequestPartNumberInteger", "documentation":"The part number to retrieve.
", "location":"querystring", "locationName":"partNumber" } } }, "GetReadSetRequestPartNumberInteger":{ "type":"integer", "box":true, "max":10000, "min":1 }, "GetReadSetResponse":{ "type":"structure", "members":{ "payload":{ "shape":"ReadSetStreamingBlob", "documentation":"The read set file payload.
" } }, "payload":"payload" }, "GetReferenceImportJobRequest":{ "type":"structure", "required":[ "id", "referenceStoreId" ], "members":{ "id":{ "shape":"ImportJobId", "documentation":"The job's ID.
", "location":"uri", "locationName":"id" }, "referenceStoreId":{ "shape":"ReferenceStoreId", "documentation":"The job's reference store ID.
", "location":"uri", "locationName":"referenceStoreId" } } }, "GetReferenceImportJobResponse":{ "type":"structure", "required":[ "id", "referenceStoreId", "roleArn", "status", "creationTime", "sources" ], "members":{ "id":{ "shape":"ImportJobId", "documentation":"The job's ID.
" }, "referenceStoreId":{ "shape":"ReferenceStoreId", "documentation":"The job's reference store ID.
" }, "roleArn":{ "shape":"RoleArn", "documentation":"The job's service role ARN.
" }, "status":{ "shape":"ReferenceImportJobStatus", "documentation":"The job's status.
" }, "statusMessage":{ "shape":"JobStatusMessage", "documentation":"The job's status message.
" }, "creationTime":{ "shape":"SyntheticTimestamp_date_time", "documentation":"When the job was created.
" }, "completionTime":{ "shape":"SyntheticTimestamp_date_time", "documentation":"When the job completed.
" }, "sources":{ "shape":"ImportReferenceSourceList", "documentation":"The job's source files.
" } } }, "GetReferenceMetadataRequest":{ "type":"structure", "required":[ "id", "referenceStoreId" ], "members":{ "id":{ "shape":"ReferenceId", "documentation":"The reference's ID.
", "location":"uri", "locationName":"id" }, "referenceStoreId":{ "shape":"ReferenceStoreId", "documentation":"The reference's reference store ID.
", "location":"uri", "locationName":"referenceStoreId" } } }, "GetReferenceMetadataResponse":{ "type":"structure", "required":[ "id", "arn", "referenceStoreId", "md5", "creationTime", "updateTime" ], "members":{ "id":{ "shape":"ReferenceId", "documentation":"The reference's ID.
" }, "arn":{ "shape":"ReferenceArn", "documentation":"The reference's ARN.
" }, "referenceStoreId":{ "shape":"ReferenceStoreId", "documentation":"The reference's reference store ID.
" }, "md5":{ "shape":"Md5", "documentation":"The reference's MD5 checksum.
" }, "status":{ "shape":"ReferenceStatus", "documentation":"The reference's status.
" }, "name":{ "shape":"ReferenceName", "documentation":"The reference's name.
" }, "description":{ "shape":"ReferenceDescription", "documentation":"The reference's description.
" }, "creationTime":{ "shape":"SyntheticTimestamp_date_time", "documentation":"When the reference was created.
" }, "updateTime":{ "shape":"SyntheticTimestamp_date_time", "documentation":"When the reference was updated.
" }, "files":{ "shape":"ReferenceFiles", "documentation":"The reference's files.
" }, "creationType":{ "shape":"ReferenceCreationType", "documentation":"The reference's creation type.
" }, "creationJobId":{ "shape":"CreationJobId", "documentation":"The reference's creation job ID.
" } } }, "GetReferenceRequest":{ "type":"structure", "required":[ "id", "referenceStoreId", "partNumber" ], "members":{ "id":{ "shape":"ReferenceId", "documentation":"The reference's ID.
", "location":"uri", "locationName":"id" }, "referenceStoreId":{ "shape":"ReferenceStoreId", "documentation":"The reference's store ID.
", "location":"uri", "locationName":"referenceStoreId" }, "range":{ "shape":"Range", "documentation":"The range to retrieve.
", "location":"header", "locationName":"Range" }, "partNumber":{ "shape":"GetReferenceRequestPartNumberInteger", "documentation":"The part number to retrieve.
", "location":"querystring", "locationName":"partNumber" }, "file":{ "shape":"ReferenceFile", "documentation":"The file to retrieve.
", "location":"querystring", "locationName":"file" } } }, "GetReferenceRequestPartNumberInteger":{ "type":"integer", "box":true, "max":10000, "min":1 }, "GetReferenceResponse":{ "type":"structure", "members":{ "payload":{ "shape":"ReferenceStreamingBlob", "documentation":"The reference file payload.
" } }, "payload":"payload" }, "GetReferenceStoreRequest":{ "type":"structure", "required":["id"], "members":{ "id":{ "shape":"ReferenceStoreId", "documentation":"The store's ID.
", "location":"uri", "locationName":"id" } } }, "GetReferenceStoreResponse":{ "type":"structure", "required":[ "id", "arn", "creationTime" ], "members":{ "id":{ "shape":"ReferenceStoreId", "documentation":"The store's ID.
" }, "arn":{ "shape":"ReferenceStoreArn", "documentation":"The store's ARN.
" }, "name":{ "shape":"ReferenceStoreName", "documentation":"The store's name.
" }, "description":{ "shape":"ReferenceStoreDescription", "documentation":"The store's description.
" }, "sseConfig":{ "shape":"SseConfig", "documentation":"The store's server-side encryption (SSE) settings.
" }, "creationTime":{ "shape":"SyntheticTimestamp_date_time", "documentation":"When the store was created.
" } } }, "GetRunCacheRequest":{ "type":"structure", "required":["id"], "members":{ "id":{ "shape":"RunCacheId", "documentation":"The identifier of the run cache to retrieve.
", "location":"uri", "locationName":"id" } } }, "GetRunCacheResponse":{ "type":"structure", "members":{ "arn":{ "shape":"RunCacheArn", "documentation":"Unique resource identifier for the run cache.
" }, "cacheBehavior":{ "shape":"CacheBehavior", "documentation":"The default cache behavior for runs using this cache.
" }, "cacheBucketOwnerId":{ "shape":"AwsAccountId", "documentation":"The identifier of the bucket owner.
" }, "cacheS3Uri":{ "shape":"S3UriForBucketOrObject", "documentation":"The S3 URI where the cache data is stored.
" }, "creationTime":{ "shape":"RunCacheTimestamp", "documentation":"Creation time of the run cache (an ISO 8601 formatted string).
" }, "description":{ "shape":"UserCustomDescription", "documentation":"The run cache description.
" }, "id":{ "shape":"RunCacheId", "documentation":"The run cache ID.
" }, "name":{ "shape":"UserCustomName", "documentation":"The run cache name.
" }, "status":{ "shape":"RunCacheStatus", "documentation":"The run cache status.
" }, "tags":{ "shape":"TagMap", "documentation":"The tags associated with the run cache.
" } } }, "GetRunGroupRequest":{ "type":"structure", "required":["id"], "members":{ "id":{ "shape":"RunGroupId", "documentation":"The group's ID.
", "location":"uri", "locationName":"id" } } }, "GetRunGroupResponse":{ "type":"structure", "members":{ "arn":{ "shape":"RunGroupArn", "documentation":"The group's ARN.
" }, "id":{ "shape":"RunGroupId", "documentation":"The group's ID.
" }, "name":{ "shape":"RunGroupName", "documentation":"The group's name.
" }, "maxCpus":{ "shape":"GetRunGroupResponseMaxCpusInteger", "documentation":"The group's maximum number of CPUs to use.
" }, "maxRuns":{ "shape":"GetRunGroupResponseMaxRunsInteger", "documentation":"The maximum number of concurrent runs for the group.
" }, "maxDuration":{ "shape":"GetRunGroupResponseMaxDurationInteger", "documentation":"The group's maximum run time in minutes.
" }, "creationTime":{ "shape":"RunGroupTimestamp", "documentation":"When the group was created.
" }, "tags":{ "shape":"TagMap", "documentation":"The group's tags.
" }, "maxGpus":{ "shape":"GetRunGroupResponseMaxGpusInteger", "documentation":"The maximum GPUs that can be used by a run group.
" } } }, "GetRunGroupResponseMaxCpusInteger":{ "type":"integer", "box":true, "max":100000, "min":1 }, "GetRunGroupResponseMaxDurationInteger":{ "type":"integer", "box":true, "max":100000, "min":1 }, "GetRunGroupResponseMaxGpusInteger":{ "type":"integer", "box":true, "max":100000, "min":1 }, "GetRunGroupResponseMaxRunsInteger":{ "type":"integer", "box":true, "max":100000, "min":1 }, "GetRunRequest":{ "type":"structure", "required":["id"], "members":{ "id":{ "shape":"RunId", "documentation":"The run's ID.
", "location":"uri", "locationName":"id" }, "export":{ "shape":"RunExportList", "documentation":"The run's export format.
", "location":"querystring", "locationName":"export" } } }, "GetRunResponse":{ "type":"structure", "members":{ "arn":{ "shape":"RunArn", "documentation":"The run's ARN.
" }, "id":{ "shape":"RunId", "documentation":"The run's ID.
" }, "cacheId":{ "shape":"NumericIdInArn", "documentation":"The run cache associated with the run.
" }, "cacheBehavior":{ "shape":"CacheBehavior", "documentation":"The run cache behavior for the run.
" }, "engineVersion":{ "shape":"EngineVersion", "documentation":"The workflow engine version.
" }, "status":{ "shape":"RunStatus", "documentation":"The run's status.
" }, "workflowId":{ "shape":"WorkflowId", "documentation":"The run's workflow ID.
" }, "workflowType":{ "shape":"WorkflowType", "documentation":"The run's workflow type.
" }, "runId":{ "shape":"RunId", "documentation":"The run's ID.
" }, "roleArn":{ "shape":"RunRoleArn", "documentation":"The run's service role ARN.
" }, "name":{ "shape":"RunName", "documentation":"The run's name.
" }, "runGroupId":{ "shape":"RunGroupId", "documentation":"The run's group ID.
" }, "priority":{ "shape":"GetRunResponsePriorityInteger", "documentation":"The run's priority.
" }, "definition":{ "shape":"WorkflowDefinition", "documentation":"The run's definition.
" }, "digest":{ "shape":"WorkflowDigest", "documentation":"The run's digest.
" }, "parameters":{ "shape":"RunParameters", "documentation":"The run's parameters.
" }, "storageCapacity":{ "shape":"GetRunResponseStorageCapacityInteger", "documentation":"The run's storage capacity in gibibytes. For dynamic storage, after the run has completed, this value is the maximum amount of storage used during the run.
" }, "outputUri":{ "shape":"RunOutputUri", "documentation":"The run's output URI.
" }, "logLevel":{ "shape":"RunLogLevel", "documentation":"The run's log level.
" }, "resourceDigests":{ "shape":"RunResourceDigests", "documentation":"The run's resource digests.
" }, "startedBy":{ "shape":"RunStartedBy", "documentation":"Who started the run.
" }, "creationTime":{ "shape":"RunTimestamp", "documentation":"When the run was created.
" }, "startTime":{ "shape":"RunTimestamp", "documentation":"When the run started.
" }, "stopTime":{ "shape":"RunTimestamp", "documentation":"The run's stop time.
" }, "statusMessage":{ "shape":"RunStatusMessage", "documentation":"The run's status message.
" }, "tags":{ "shape":"TagMap", "documentation":"The run's tags.
" }, "accelerators":{ "shape":"Accelerators", "documentation":"The computational accelerator used to run the workflow.
" }, "retentionMode":{ "shape":"RunRetentionMode", "documentation":"The run's retention mode.
" }, "failureReason":{ "shape":"RunFailureReason", "documentation":"The reason a run has failed.
" }, "logLocation":{ "shape":"RunLogLocation", "documentation":"The location of the run log.
" }, "uuid":{ "shape":"RunUuid", "documentation":"The universally unique identifier for a run.
" }, "runOutputUri":{ "shape":"RunOutputUri", "documentation":"The destination for workflow outputs.
" }, "storageType":{ "shape":"StorageType", "documentation":"The run's storage type.
" }, "workflowOwnerId":{ "shape":"WorkflowOwnerId", "documentation":"The ID of the workflow owner.
" } } }, "GetRunResponsePriorityInteger":{ "type":"integer", "box":true, "max":100000, "min":0 }, "GetRunResponseStorageCapacityInteger":{ "type":"integer", "box":true, "max":100000, "min":0 }, "GetRunTaskRequest":{ "type":"structure", "required":[ "id", "taskId" ], "members":{ "id":{ "shape":"RunId", "documentation":"The workflow run ID.
", "location":"uri", "locationName":"id" }, "taskId":{ "shape":"TaskId", "documentation":"The task's ID.
", "location":"uri", "locationName":"taskId" } } }, "GetRunTaskResponse":{ "type":"structure", "members":{ "taskId":{ "shape":"TaskId", "documentation":"The task's ID.
" }, "status":{ "shape":"TaskStatus", "documentation":"The task's status.
" }, "name":{ "shape":"TaskName", "documentation":"The task's name.
" }, "cpus":{ "shape":"GetRunTaskResponseCpusInteger", "documentation":"The task's CPU usage.
" }, "cacheHit":{ "shape":"Boolean", "documentation":"Set to true if AWS HealthOmics found a matching entry in the run cache for this task.
" }, "cacheS3Uri":{ "shape":"S3UriForBucketOrObject", "documentation":"The S3 URI of the cache location.
" }, "memory":{ "shape":"GetRunTaskResponseMemoryInteger", "documentation":"The task's memory use in gigabytes.
" }, "creationTime":{ "shape":"TaskTimestamp", "documentation":"When the task was created.
" }, "startTime":{ "shape":"TaskTimestamp", "documentation":"The task's start time.
" }, "stopTime":{ "shape":"TaskTimestamp", "documentation":"The task's stop time.
" }, "statusMessage":{ "shape":"TaskStatusMessage", "documentation":"The task's status message.
" }, "logStream":{ "shape":"TaskLogStream", "documentation":"The task's log stream.
" }, "gpus":{ "shape":"GetRunTaskResponseGpusInteger", "documentation":"The number of Graphics Processing Units (GPU) specified in the task.
" }, "instanceType":{ "shape":"TaskInstanceType", "documentation":"The instance type for a task.
" }, "failureReason":{ "shape":"TaskFailureReason", "documentation":"The reason a task has failed.
" } } }, "GetRunTaskResponseCpusInteger":{ "type":"integer", "box":true, "min":1 }, "GetRunTaskResponseGpusInteger":{ "type":"integer", "box":true, "min":0 }, "GetRunTaskResponseMemoryInteger":{ "type":"integer", "box":true, "min":1 }, "GetS3AccessPolicyRequest":{ "type":"structure", "required":["s3AccessPointArn"], "members":{ "s3AccessPointArn":{ "shape":"S3AccessPointArn", "documentation":"The S3 access point ARN that has the access policy.
", "location":"uri", "locationName":"s3AccessPointArn" } } }, "GetS3AccessPolicyResponse":{ "type":"structure", "required":["s3AccessPolicy"], "members":{ "s3AccessPointArn":{ "shape":"S3AccessPointArn", "documentation":"The S3 access point ARN that has the access policy.
" }, "storeId":{ "shape":"StoreId", "documentation":"The AWS-generated Sequence Store or Reference Store ID.
" }, "storeType":{ "shape":"StoreType", "documentation":"The type of store associated with the access point.
" }, "updateTime":{ "shape":"SyntheticTimestamp_date_time", "documentation":"The time when the policy was last updated.
" }, "s3AccessPolicy":{ "shape":"S3AccessPolicy", "documentation":"The current resource policy that controls S3 access on the store.
", "jsonvalue":true } } }, "GetSequenceStoreRequest":{ "type":"structure", "required":["id"], "members":{ "id":{ "shape":"SequenceStoreId", "documentation":"The store's ID.
", "location":"uri", "locationName":"id" } } }, "GetSequenceStoreResponse":{ "type":"structure", "required":[ "id", "arn", "creationTime" ], "members":{ "id":{ "shape":"SequenceStoreId", "documentation":"The store's ID.
" }, "arn":{ "shape":"SequenceStoreArn", "documentation":"The store's ARN.
" }, "name":{ "shape":"SequenceStoreName", "documentation":"The store's name.
" }, "description":{ "shape":"SequenceStoreDescription", "documentation":"The store's description.
" }, "sseConfig":{ "shape":"SseConfig", "documentation":"The store's server-side encryption (SSE) settings.
" }, "creationTime":{ "shape":"SyntheticTimestamp_date_time", "documentation":"When the store was created.
" }, "fallbackLocation":{ "shape":"S3Destination", "documentation":"An S3 location that is used to store files that have failed a direct upload.
" }, "s3Access":{ "shape":"SequenceStoreS3Access", "documentation":"The S3 metadata of a sequence store, including the ARN and S3 URI of the S3 bucket.
" }, "eTagAlgorithmFamily":{ "shape":"ETagAlgorithmFamily", "documentation":"The algorithm family of the ETag.
" }, "status":{ "shape":"SequenceStoreStatus", "documentation":"The status of the sequence store.
" }, "statusMessage":{ "shape":"SequenceStoreStatusMessage", "documentation":"The status message of the sequence store.
" }, "propagatedSetLevelTags":{ "shape":"PropagatedSetLevelTags", "documentation":"The tags keys to propagate to the S3 objects associated with read sets in the sequence store.
" }, "updateTime":{ "shape":"SyntheticTimestamp_date_time", "documentation":"The last-updated time of the sequence store.
" } } }, "GetShareRequest":{ "type":"structure", "required":["shareId"], "members":{ "shareId":{ "shape":"String", "documentation":"The ID of the share.
", "location":"uri", "locationName":"shareId" } } }, "GetShareResponse":{ "type":"structure", "members":{ "share":{ "shape":"ShareDetails", "documentation":"A resource share details object. The object includes the status, the resourceArn, and ownerId.
" } } }, "GetVariantImportRequest":{ "type":"structure", "required":["jobId"], "members":{ "jobId":{ "shape":"ResourceId", "documentation":"The job's ID.
", "location":"uri", "locationName":"jobId" } } }, "GetVariantImportResponse":{ "type":"structure", "required":[ "id", "destinationName", "roleArn", "status", "statusMessage", "creationTime", "updateTime", "items", "runLeftNormalization" ], "members":{ "id":{ "shape":"ResourceId", "documentation":"The job's ID.
" }, "destinationName":{ "shape":"StoreName", "documentation":"The job's destination variant store.
" }, "roleArn":{ "shape":"Arn", "documentation":"The job's service role ARN.
" }, "status":{ "shape":"JobStatus", "documentation":"The job's status.
" }, "statusMessage":{ "shape":"JobStatusMsg", "documentation":"The job's status message.
" }, "creationTime":{ "shape":"CreationTime", "documentation":"When the job was created.
" }, "updateTime":{ "shape":"UpdateTime", "documentation":"When the job was updated.
" }, "completionTime":{ "shape":"CompletionTime", "documentation":"When the job completed.
" }, "items":{ "shape":"VariantImportItemDetails", "documentation":"The job's items.
" }, "runLeftNormalization":{ "shape":"RunLeftNormalization", "documentation":"The job's left normalization setting.
" }, "annotationFields":{ "shape":"AnnotationFieldMap", "documentation":"The annotation schema generated by the parsed annotation data.
" } } }, "GetVariantStoreRequest":{ "type":"structure", "required":["name"], "members":{ "name":{ "shape":"String", "documentation":"The store's name.
", "location":"uri", "locationName":"name" } } }, "GetVariantStoreResponse":{ "type":"structure", "required":[ "id", "reference", "status", "storeArn", "name", "description", "sseConfig", "creationTime", "updateTime", "tags", "statusMessage", "storeSizeBytes" ], "members":{ "id":{ "shape":"ResourceId", "documentation":"The store's ID.
" }, "reference":{ "shape":"ReferenceItem", "documentation":"The store's genome reference.
" }, "status":{ "shape":"StoreStatus", "documentation":"The store's status.
" }, "storeArn":{ "shape":"Arn", "documentation":"The store's ARN.
" }, "name":{ "shape":"String", "documentation":"The store's name.
" }, "description":{ "shape":"Description", "documentation":"The store's description.
" }, "sseConfig":{ "shape":"SseConfig", "documentation":"The store's server-side encryption (SSE) settings.
" }, "creationTime":{ "shape":"CreationTime", "documentation":"When the store was created.
" }, "updateTime":{ "shape":"UpdateTime", "documentation":"When the store was updated.
" }, "tags":{ "shape":"TagMap", "documentation":"The store's tags.
" }, "statusMessage":{ "shape":"StatusMessage", "documentation":"The store's status message.
" }, "storeSizeBytes":{ "shape":"Long", "documentation":"The store's size in bytes.
" } } }, "GetWorkflowRequest":{ "type":"structure", "required":["id"], "members":{ "id":{ "shape":"WorkflowId", "documentation":"The workflow's ID.
", "location":"uri", "locationName":"id" }, "type":{ "shape":"WorkflowType", "documentation":"The workflow's type.
", "location":"querystring", "locationName":"type" }, "export":{ "shape":"WorkflowExportList", "documentation":"The export format for the workflow.
", "location":"querystring", "locationName":"export" }, "workflowOwnerId":{ "shape":"WorkflowOwnerId", "documentation":"The ID of the workflow owner.
", "location":"querystring", "locationName":"workflowOwnerId" } } }, "GetWorkflowResponse":{ "type":"structure", "members":{ "arn":{ "shape":"WorkflowArn", "documentation":"The workflow's ARN.
" }, "id":{ "shape":"WorkflowId", "documentation":"The workflow's ID.
" }, "status":{ "shape":"WorkflowStatus", "documentation":"The workflow's status.
" }, "type":{ "shape":"WorkflowType", "documentation":"The workflow's type.
" }, "name":{ "shape":"WorkflowName", "documentation":"The workflow's name.
" }, "description":{ "shape":"WorkflowDescription", "documentation":"The workflow's description.
" }, "engine":{ "shape":"WorkflowEngine", "documentation":"The workflow's engine.
" }, "definition":{ "shape":"WorkflowDefinition", "documentation":"The workflow's definition.
" }, "main":{ "shape":"WorkflowMain", "documentation":"The path of the main definition file for the workflow.
" }, "digest":{ "shape":"WorkflowDigest", "documentation":"The workflow's digest.
" }, "parameterTemplate":{ "shape":"WorkflowParameterTemplate", "documentation":"The workflow's parameter template.
" }, "storageCapacity":{ "shape":"GetWorkflowResponseStorageCapacityInteger", "documentation":"The workflow's default run storage capacity in gibibytes.
" }, "creationTime":{ "shape":"WorkflowTimestamp", "documentation":"When the workflow was created.
" }, "statusMessage":{ "shape":"WorkflowStatusMessage", "documentation":"The workflow's status message.
" }, "tags":{ "shape":"TagMap", "documentation":"The workflow's tags.
" }, "metadata":{ "shape":"WorkflowMetadata", "documentation":"Gets metadata for workflow.
" }, "accelerators":{ "shape":"Accelerators", "documentation":"The computational accelerator specified to run the workflow.
" } } }, "GetWorkflowResponseStorageCapacityInteger":{ "type":"integer", "box":true, "max":100000, "min":0 }, "Header":{"type":"boolean"}, "ImportJobId":{ "type":"string", "max":36, "min":10, "pattern":"[0-9]+" }, "ImportReadSetFilter":{ "type":"structure", "members":{ "status":{ "shape":"ReadSetImportJobStatus", "documentation":"A status to filter on.
" }, "createdAfter":{ "shape":"SyntheticTimestamp_date_time", "documentation":"The filter's start date.
" }, "createdBefore":{ "shape":"SyntheticTimestamp_date_time", "documentation":"The filter's end date.
" } }, "documentation":"A filter for import read set jobs.
" }, "ImportReadSetJobItem":{ "type":"structure", "required":[ "id", "sequenceStoreId", "roleArn", "status", "creationTime" ], "members":{ "id":{ "shape":"ImportJobId", "documentation":"The job's ID.
" }, "sequenceStoreId":{ "shape":"SequenceStoreId", "documentation":"The job's sequence store ID.
" }, "roleArn":{ "shape":"RoleArn", "documentation":"The job's service role ARN.
" }, "status":{ "shape":"ReadSetImportJobStatus", "documentation":"The job's status.
" }, "creationTime":{ "shape":"SyntheticTimestamp_date_time", "documentation":"When the job was created.
" }, "completionTime":{ "shape":"SyntheticTimestamp_date_time", "documentation":"When the job completed.
" } }, "documentation":"An import read set job.
" }, "ImportReadSetJobList":{ "type":"list", "member":{"shape":"ImportReadSetJobItem"} }, "ImportReadSetSourceItem":{ "type":"structure", "required":[ "sourceFiles", "sourceFileType", "status", "subjectId", "sampleId" ], "members":{ "sourceFiles":{ "shape":"SourceFiles", "documentation":"The source files' location in Amazon S3.
" }, "sourceFileType":{ "shape":"FileType", "documentation":"The source's file type.
" }, "status":{ "shape":"ReadSetImportJobItemStatus", "documentation":"The source's status.
" }, "statusMessage":{ "shape":"JobStatusMessage", "documentation":"The source's status message.
" }, "subjectId":{ "shape":"SubjectId", "documentation":"The source's subject ID.
" }, "sampleId":{ "shape":"SampleId", "documentation":"The source's sample ID.
" }, "generatedFrom":{ "shape":"GeneratedFrom", "documentation":"Where the source originated.
" }, "referenceArn":{ "shape":"ReferenceArn", "documentation":"The source's genome reference ARN.
" }, "name":{ "shape":"ReadSetName", "documentation":"The source's name.
" }, "description":{ "shape":"ReadSetDescription", "documentation":"The source's description.
" }, "tags":{ "shape":"TagMap", "documentation":"The source's tags.
" }, "readSetId":{ "shape":"ReadSetId", "documentation":"The source's read set ID.
" } }, "documentation":"A source for an import read set job.
" }, "ImportReadSetSourceList":{ "type":"list", "member":{"shape":"ImportReadSetSourceItem"} }, "ImportReferenceFilter":{ "type":"structure", "members":{ "status":{ "shape":"ReferenceImportJobStatus", "documentation":"A status to filter on.
" }, "createdAfter":{ "shape":"SyntheticTimestamp_date_time", "documentation":"The filter's start date.
" }, "createdBefore":{ "shape":"SyntheticTimestamp_date_time", "documentation":"The filter's end date.
" } }, "documentation":"A filter for import references.
" }, "ImportReferenceJobItem":{ "type":"structure", "required":[ "id", "referenceStoreId", "roleArn", "status", "creationTime" ], "members":{ "id":{ "shape":"ImportJobId", "documentation":"The job's ID.
" }, "referenceStoreId":{ "shape":"ReferenceStoreId", "documentation":"The job's reference store ID.
" }, "roleArn":{ "shape":"RoleArn", "documentation":"The job's service role ARN.
" }, "status":{ "shape":"ReferenceImportJobStatus", "documentation":"The job's status.
" }, "creationTime":{ "shape":"SyntheticTimestamp_date_time", "documentation":"When the job was created.
" }, "completionTime":{ "shape":"SyntheticTimestamp_date_time", "documentation":"When the job completed.
" } }, "documentation":"An import reference job.
" }, "ImportReferenceJobList":{ "type":"list", "member":{"shape":"ImportReferenceJobItem"} }, "ImportReferenceSourceItem":{ "type":"structure", "required":["status"], "members":{ "sourceFile":{ "shape":"S3Uri", "documentation":"The source file's location in Amazon S3.
" }, "status":{ "shape":"ReferenceImportJobItemStatus", "documentation":"The source's status.
" }, "statusMessage":{ "shape":"JobStatusMessage", "documentation":"The source's status message.
" }, "name":{ "shape":"ReferenceName", "documentation":"The source's name.
" }, "description":{ "shape":"ReferenceDescription", "documentation":"The source's description.
" }, "tags":{ "shape":"TagMap", "documentation":"The source's tags.
" }, "referenceId":{ "shape":"ReferenceId", "documentation":"The source's reference ID.
" } }, "documentation":"An genome reference source.
" }, "ImportReferenceSourceList":{ "type":"list", "member":{"shape":"ImportReferenceSourceItem"} }, "Integer":{ "type":"integer", "box":true }, "InternalServerException":{ "type":"structure", "required":["message"], "members":{ "message":{"shape":"String"} }, "documentation":"An unexpected error occurred. Try the request again.
", "error":{"httpStatusCode":500}, "exception":true, "fault":true, "retryable":{"throttling":false} }, "JobStatus":{ "type":"string", "enum":[ "SUBMITTED", "IN_PROGRESS", "CANCELLED", "COMPLETED", "FAILED", "COMPLETED_WITH_FAILURES" ] }, "JobStatusMessage":{ "type":"string", "max":127, "min":1, "pattern":"[\\p{L}||\\p{M}||\\p{Z}||\\p{S}||\\p{N}||\\p{P}]+" }, "JobStatusMsg":{"type":"string"}, "LineSep":{ "type":"string", "max":20, "min":1 }, "ListAnnotationImportJobsFilter":{ "type":"structure", "members":{ "status":{ "shape":"JobStatus", "documentation":"A status to filter on.
" }, "storeName":{ "shape":"String", "documentation":"A store name to filter on.
" } }, "documentation":"A filter for annotation import jobs.
" }, "ListAnnotationImportJobsRequest":{ "type":"structure", "members":{ "maxResults":{ "shape":"ListAnnotationImportJobsRequestMaxResultsInteger", "documentation":"The maximum number of jobs to return in one page of results.
", "location":"querystring", "locationName":"maxResults" }, "ids":{ "shape":"ListAnnotationImportJobsRequestIdsList", "documentation":"IDs of annotation import jobs to retrieve.
" }, "nextToken":{ "shape":"ListAnnotationImportJobsRequestNextTokenString", "documentation":"Specifies the pagination token from a previous request to retrieve the next page of results.
", "location":"querystring", "locationName":"nextToken" }, "filter":{ "shape":"ListAnnotationImportJobsFilter", "documentation":"A filter to apply to the list.
" } } }, "ListAnnotationImportJobsRequestIdsList":{ "type":"list", "member":{"shape":"ResourceIdentifier"}, "max":20, "min":1 }, "ListAnnotationImportJobsRequestMaxResultsInteger":{ "type":"integer", "box":true, "max":100, "min":1 }, "ListAnnotationImportJobsRequestNextTokenString":{ "type":"string", "max":10000, "min":1 }, "ListAnnotationImportJobsResponse":{ "type":"structure", "members":{ "annotationImportJobs":{ "shape":"AnnotationImportJobItems", "documentation":"A list of jobs.
" }, "nextToken":{ "shape":"String", "documentation":"Specifies the pagination token from a previous request to retrieve the next page of results.
" } } }, "ListAnnotationStoreVersionsFilter":{ "type":"structure", "members":{ "status":{ "shape":"VersionStatus", "documentation":"The status of an annotation store version.
" } }, "documentation":"Use filters to focus the returned annotation store versions on a specific parameter, such as the status of the annotation store.
" }, "ListAnnotationStoreVersionsRequest":{ "type":"structure", "required":["name"], "members":{ "name":{ "shape":"String", "documentation":"The name of an annotation store.
", "location":"uri", "locationName":"name" }, "maxResults":{ "shape":"ListAnnotationStoreVersionsRequestMaxResultsInteger", "documentation":"The maximum number of annotation store versions to return in one page of results.
", "location":"querystring", "locationName":"maxResults" }, "nextToken":{ "shape":"ListAnnotationStoreVersionsRequestNextTokenString", "documentation":"Specifies the pagination token from a previous request to retrieve the next page of results.
", "location":"querystring", "locationName":"nextToken" }, "filter":{ "shape":"ListAnnotationStoreVersionsFilter", "documentation":"A filter to apply to the list of annotation store versions.
" } } }, "ListAnnotationStoreVersionsRequestMaxResultsInteger":{ "type":"integer", "box":true, "max":100, "min":1 }, "ListAnnotationStoreVersionsRequestNextTokenString":{ "type":"string", "max":10000, "min":1 }, "ListAnnotationStoreVersionsResponse":{ "type":"structure", "members":{ "annotationStoreVersions":{ "shape":"AnnotationStoreVersionItems", "documentation":"Lists all versions of an annotation store.
" }, "nextToken":{ "shape":"String", "documentation":"Specifies the pagination token from a previous request to retrieve the next page of results.
" } } }, "ListAnnotationStoresFilter":{ "type":"structure", "members":{ "status":{ "shape":"StoreStatus", "documentation":"A status to filter on.
" } }, "documentation":"A filter for annotation stores.
" }, "ListAnnotationStoresRequest":{ "type":"structure", "members":{ "ids":{ "shape":"ListAnnotationStoresRequestIdsList", "documentation":"IDs of stores to list.
" }, "maxResults":{ "shape":"ListAnnotationStoresRequestMaxResultsInteger", "documentation":"The maximum number of stores to return in one page of results.
", "location":"querystring", "locationName":"maxResults" }, "nextToken":{ "shape":"ListAnnotationStoresRequestNextTokenString", "documentation":"Specify the pagination token from a previous request to retrieve the next page of results.
", "location":"querystring", "locationName":"nextToken" }, "filter":{ "shape":"ListAnnotationStoresFilter", "documentation":"A filter to apply to the list.
" } } }, "ListAnnotationStoresRequestIdsList":{ "type":"list", "member":{"shape":"ResourceIdentifier"}, "max":20, "min":1 }, "ListAnnotationStoresRequestMaxResultsInteger":{ "type":"integer", "box":true, "max":100, "min":1 }, "ListAnnotationStoresRequestNextTokenString":{ "type":"string", "max":10000, "min":1 }, "ListAnnotationStoresResponse":{ "type":"structure", "members":{ "annotationStores":{ "shape":"AnnotationStoreItems", "documentation":"A list of stores.
" }, "nextToken":{ "shape":"String", "documentation":"A pagination token that's included if more results are available.
" } } }, "ListMultipartReadSetUploadsRequest":{ "type":"structure", "required":["sequenceStoreId"], "members":{ "sequenceStoreId":{ "shape":"SequenceStoreId", "documentation":"The Sequence Store ID used for the multipart uploads.
", "location":"uri", "locationName":"sequenceStoreId" }, "maxResults":{ "shape":"ListMultipartReadSetUploadsRequestMaxResultsInteger", "documentation":"The maximum number of multipart uploads returned in a page.
", "location":"querystring", "locationName":"maxResults" }, "nextToken":{ "shape":"NextToken", "documentation":"Next token returned in the response of a previous ListMultipartReadSetUploads call. Used to get the next page of results.
", "location":"querystring", "locationName":"nextToken" } } }, "ListMultipartReadSetUploadsRequestMaxResultsInteger":{ "type":"integer", "box":true, "max":100, "min":1 }, "ListMultipartReadSetUploadsResponse":{ "type":"structure", "members":{ "nextToken":{ "shape":"NextToken", "documentation":"Next token returned in the response of a previous ListMultipartReadSetUploads call. Used to get the next page of results.
" }, "uploads":{ "shape":"MultipartReadSetUploadList", "documentation":"An array of multipart uploads.
" } } }, "ListReadSetActivationJobsRequest":{ "type":"structure", "required":["sequenceStoreId"], "members":{ "sequenceStoreId":{ "shape":"SequenceStoreId", "documentation":"The read set's sequence store ID.
", "location":"uri", "locationName":"sequenceStoreId" }, "maxResults":{ "shape":"ListReadSetActivationJobsRequestMaxResultsInteger", "documentation":"The maximum number of read set activation jobs to return in one page of results.
", "location":"querystring", "locationName":"maxResults" }, "nextToken":{ "shape":"NextToken", "documentation":"Specify the pagination token from a previous request to retrieve the next page of results.
", "location":"querystring", "locationName":"nextToken" }, "filter":{ "shape":"ActivateReadSetFilter", "documentation":"A filter to apply to the list.
" } } }, "ListReadSetActivationJobsRequestMaxResultsInteger":{ "type":"integer", "box":true, "max":100, "min":1 }, "ListReadSetActivationJobsResponse":{ "type":"structure", "members":{ "nextToken":{ "shape":"NextToken", "documentation":"A pagination token that's included if more results are available.
" }, "activationJobs":{ "shape":"ActivateReadSetJobList", "documentation":"A list of jobs.
" } } }, "ListReadSetExportJobsRequest":{ "type":"structure", "required":["sequenceStoreId"], "members":{ "sequenceStoreId":{ "shape":"SequenceStoreId", "documentation":"The jobs' sequence store ID.
", "location":"uri", "locationName":"sequenceStoreId" }, "maxResults":{ "shape":"ListReadSetExportJobsRequestMaxResultsInteger", "documentation":"The maximum number of jobs to return in one page of results.
", "location":"querystring", "locationName":"maxResults" }, "nextToken":{ "shape":"NextToken", "documentation":"Specify the pagination token from a previous request to retrieve the next page of results.
", "location":"querystring", "locationName":"nextToken" }, "filter":{ "shape":"ExportReadSetFilter", "documentation":"A filter to apply to the list.
" } } }, "ListReadSetExportJobsRequestMaxResultsInteger":{ "type":"integer", "box":true, "max":100, "min":1 }, "ListReadSetExportJobsResponse":{ "type":"structure", "members":{ "nextToken":{ "shape":"NextToken", "documentation":"A pagination token that's included if more results are available.
" }, "exportJobs":{ "shape":"ExportReadSetJobDetailList", "documentation":"A list of jobs.
" } } }, "ListReadSetImportJobsRequest":{ "type":"structure", "required":["sequenceStoreId"], "members":{ "maxResults":{ "shape":"ListReadSetImportJobsRequestMaxResultsInteger", "documentation":"The maximum number of jobs to return in one page of results.
", "location":"querystring", "locationName":"maxResults" }, "nextToken":{ "shape":"NextToken", "documentation":"Specify the pagination token from a previous request to retrieve the next page of results.
", "location":"querystring", "locationName":"nextToken" }, "sequenceStoreId":{ "shape":"SequenceStoreId", "documentation":"The jobs' sequence store ID.
", "location":"uri", "locationName":"sequenceStoreId" }, "filter":{ "shape":"ImportReadSetFilter", "documentation":"A filter to apply to the list.
" } } }, "ListReadSetImportJobsRequestMaxResultsInteger":{ "type":"integer", "box":true, "max":100, "min":1 }, "ListReadSetImportJobsResponse":{ "type":"structure", "members":{ "nextToken":{ "shape":"NextToken", "documentation":"A pagination token that's included if more results are available.
" }, "importJobs":{ "shape":"ImportReadSetJobList", "documentation":"A list of jobs.
" } } }, "ListReadSetUploadPartsRequest":{ "type":"structure", "required":[ "sequenceStoreId", "uploadId", "partSource" ], "members":{ "sequenceStoreId":{ "shape":"SequenceStoreId", "documentation":"The Sequence Store ID used for the multipart uploads.
", "location":"uri", "locationName":"sequenceStoreId" }, "uploadId":{ "shape":"UploadId", "documentation":"The ID for the initiated multipart upload.
", "location":"uri", "locationName":"uploadId" }, "partSource":{ "shape":"ReadSetPartSource", "documentation":"The source file for the upload part.
" }, "maxResults":{ "shape":"ListReadSetUploadPartsRequestMaxResultsInteger", "documentation":"The maximum number of read set upload parts returned in a page.
", "location":"querystring", "locationName":"maxResults" }, "nextToken":{ "shape":"NextToken", "documentation":"Next token returned in the response of a previous ListReadSetUploadPartsRequest call. Used to get the next page of results.
", "location":"querystring", "locationName":"nextToken" }, "filter":{ "shape":"ReadSetUploadPartListFilter", "documentation":"Attributes used to filter for a specific subset of read set part uploads.
" } } }, "ListReadSetUploadPartsRequestMaxResultsInteger":{ "type":"integer", "box":true, "max":100, "min":1 }, "ListReadSetUploadPartsResponse":{ "type":"structure", "members":{ "nextToken":{ "shape":"NextToken", "documentation":"Next token returned in the response of a previous ListReadSetUploadParts call. Used to get the next page of results.
" }, "parts":{ "shape":"ReadSetUploadPartList", "documentation":"An array of upload parts.
" } } }, "ListReadSetsRequest":{ "type":"structure", "required":["sequenceStoreId"], "members":{ "sequenceStoreId":{ "shape":"SequenceStoreId", "documentation":"The jobs' sequence store ID.
", "location":"uri", "locationName":"sequenceStoreId" }, "maxResults":{ "shape":"ListReadSetsRequestMaxResultsInteger", "documentation":"The maximum number of read sets to return in one page of results.
", "location":"querystring", "locationName":"maxResults" }, "nextToken":{ "shape":"NextToken", "documentation":"Specify the pagination token from a previous request to retrieve the next page of results.
", "location":"querystring", "locationName":"nextToken" }, "filter":{ "shape":"ReadSetFilter", "documentation":"A filter to apply to the list.
" } } }, "ListReadSetsRequestMaxResultsInteger":{ "type":"integer", "box":true, "max":100, "min":1 }, "ListReadSetsResponse":{ "type":"structure", "required":["readSets"], "members":{ "nextToken":{ "shape":"NextToken", "documentation":"A pagination token that's included if more results are available.
" }, "readSets":{ "shape":"ReadSetList", "documentation":"A list of read sets.
" } } }, "ListReferenceImportJobsRequest":{ "type":"structure", "required":["referenceStoreId"], "members":{ "maxResults":{ "shape":"ListReferenceImportJobsRequestMaxResultsInteger", "documentation":"The maximum number of jobs to return in one page of results.
", "location":"querystring", "locationName":"maxResults" }, "nextToken":{ "shape":"NextToken", "documentation":"Specify the pagination token from a previous request to retrieve the next page of results.
", "location":"querystring", "locationName":"nextToken" }, "referenceStoreId":{ "shape":"ReferenceStoreId", "documentation":"The job's reference store ID.
", "location":"uri", "locationName":"referenceStoreId" }, "filter":{ "shape":"ImportReferenceFilter", "documentation":"A filter to apply to the list.
" } } }, "ListReferenceImportJobsRequestMaxResultsInteger":{ "type":"integer", "box":true, "max":100, "min":1 }, "ListReferenceImportJobsResponse":{ "type":"structure", "members":{ "nextToken":{ "shape":"NextToken", "documentation":"A pagination token that's included if more results are available.
" }, "importJobs":{ "shape":"ImportReferenceJobList", "documentation":"A lis of jobs.
" } } }, "ListReferenceStoresRequest":{ "type":"structure", "members":{ "maxResults":{ "shape":"ListReferenceStoresRequestMaxResultsInteger", "documentation":"The maximum number of stores to return in one page of results.
", "location":"querystring", "locationName":"maxResults" }, "nextToken":{ "shape":"NextToken", "documentation":"Specify the pagination token from a previous request to retrieve the next page of results.
", "location":"querystring", "locationName":"nextToken" }, "filter":{ "shape":"ReferenceStoreFilter", "documentation":"A filter to apply to the list.
" } } }, "ListReferenceStoresRequestMaxResultsInteger":{ "type":"integer", "box":true, "max":100, "min":1 }, "ListReferenceStoresResponse":{ "type":"structure", "required":["referenceStores"], "members":{ "nextToken":{ "shape":"NextToken", "documentation":"A pagination token that's included if more results are available.
" }, "referenceStores":{ "shape":"ReferenceStoreDetailList", "documentation":"A list of reference stores.
" } } }, "ListReferencesRequest":{ "type":"structure", "required":["referenceStoreId"], "members":{ "referenceStoreId":{ "shape":"ReferenceStoreId", "documentation":"The references' reference store ID.
", "location":"uri", "locationName":"referenceStoreId" }, "maxResults":{ "shape":"ListReferencesRequestMaxResultsInteger", "documentation":"The maximum number of references to return in one page of results.
", "location":"querystring", "locationName":"maxResults" }, "nextToken":{ "shape":"NextToken", "documentation":"Specify the pagination token from a previous request to retrieve the next page of results.
", "location":"querystring", "locationName":"nextToken" }, "filter":{ "shape":"ReferenceFilter", "documentation":"A filter to apply to the list.
" } } }, "ListReferencesRequestMaxResultsInteger":{ "type":"integer", "box":true, "max":100, "min":1 }, "ListReferencesResponse":{ "type":"structure", "required":["references"], "members":{ "nextToken":{ "shape":"NextToken", "documentation":"A pagination token that's included if more results are available.
" }, "references":{ "shape":"ReferenceList", "documentation":"A list of references.
" } } }, "ListRunCachesRequest":{ "type":"structure", "members":{ "maxResults":{ "shape":"ListRunCachesRequestMaxResultsInteger", "documentation":"The maximum number of results to return.
", "location":"querystring", "locationName":"maxResults" }, "startingToken":{ "shape":"ListToken", "documentation":"Optional pagination token returned from a prior call to the ListRunCaches API operation.
Details about each run cache in the response.
" }, "nextToken":{ "shape":"ListToken", "documentation":"Pagination token to retrieve additional run caches. If the response does not have a nextTokenvalue, you have reached to the end of the list.
The run groups' name.
", "location":"querystring", "locationName":"name" }, "startingToken":{ "shape":"RunGroupListToken", "documentation":"Specify the pagination token from a previous request to retrieve the next page of results.
", "location":"querystring", "locationName":"startingToken" }, "maxResults":{ "shape":"ListRunGroupsRequestMaxResultsInteger", "documentation":"The maximum number of run groups to return in one page of results.
", "location":"querystring", "locationName":"maxResults" } } }, "ListRunGroupsRequestMaxResultsInteger":{ "type":"integer", "box":true, "max":100, "min":1 }, "ListRunGroupsResponse":{ "type":"structure", "members":{ "items":{ "shape":"RunGroupList", "documentation":"A list of groups.
" }, "nextToken":{ "shape":"RunGroupListToken", "documentation":"A pagination token that's included if more results are available.
" } } }, "ListRunTasksRequest":{ "type":"structure", "required":["id"], "members":{ "id":{ "shape":"RunId", "documentation":"The run's ID.
", "location":"uri", "locationName":"id" }, "status":{ "shape":"TaskStatus", "documentation":"Filter the list by status.
", "location":"querystring", "locationName":"status" }, "startingToken":{ "shape":"TaskListToken", "documentation":"Specify the pagination token from a previous request to retrieve the next page of results.
", "location":"querystring", "locationName":"startingToken" }, "maxResults":{ "shape":"ListRunTasksRequestMaxResultsInteger", "documentation":"The maximum number of run tasks to return in one page of results.
", "location":"querystring", "locationName":"maxResults" } } }, "ListRunTasksRequestMaxResultsInteger":{ "type":"integer", "box":true, "max":100, "min":1 }, "ListRunTasksResponse":{ "type":"structure", "members":{ "items":{ "shape":"TaskList", "documentation":"A list of tasks.
" }, "nextToken":{ "shape":"TaskListToken", "documentation":"A pagination token that's included if more results are available.
" } } }, "ListRunsRequest":{ "type":"structure", "members":{ "name":{ "shape":"RunName", "documentation":"Filter the list by run name.
", "location":"querystring", "locationName":"name" }, "runGroupId":{ "shape":"RunGroupId", "documentation":"Filter the list by run group ID.
", "location":"querystring", "locationName":"runGroupId" }, "startingToken":{ "shape":"RunListToken", "documentation":"Specify the pagination token from a previous request to retrieve the next page of results.
", "location":"querystring", "locationName":"startingToken" }, "maxResults":{ "shape":"ListRunsRequestMaxResultsInteger", "documentation":"The maximum number of runs to return in one page of results.
", "location":"querystring", "locationName":"maxResults" }, "status":{ "shape":"RunStatus", "documentation":"The status of a run.
", "location":"querystring", "locationName":"status" } } }, "ListRunsRequestMaxResultsInteger":{ "type":"integer", "box":true, "max":100, "min":1 }, "ListRunsResponse":{ "type":"structure", "members":{ "items":{ "shape":"RunList", "documentation":"A list of runs.
" }, "nextToken":{ "shape":"RunListToken", "documentation":"A pagination token that's included if more results are available.
" } } }, "ListSequenceStoresRequest":{ "type":"structure", "members":{ "maxResults":{ "shape":"ListSequenceStoresRequestMaxResultsInteger", "documentation":"The maximum number of stores to return in one page of results.
", "location":"querystring", "locationName":"maxResults" }, "nextToken":{ "shape":"NextToken", "documentation":"Specify the pagination token from a previous request to retrieve the next page of results.
", "location":"querystring", "locationName":"nextToken" }, "filter":{ "shape":"SequenceStoreFilter", "documentation":"A filter to apply to the list.
" } } }, "ListSequenceStoresRequestMaxResultsInteger":{ "type":"integer", "box":true, "max":100, "min":1 }, "ListSequenceStoresResponse":{ "type":"structure", "required":["sequenceStores"], "members":{ "nextToken":{ "shape":"NextToken", "documentation":"A pagination token that's included if more results are available.
" }, "sequenceStores":{ "shape":"SequenceStoreDetailList", "documentation":"A list of sequence stores.
" } } }, "ListSharesRequest":{ "type":"structure", "required":["resourceOwner"], "members":{ "resourceOwner":{ "shape":"ResourceOwner", "documentation":"The account that owns the resource shares.
" }, "filter":{ "shape":"Filter", "documentation":"Attributes that you use to filter for a specific subset of resource shares.
" }, "nextToken":{ "shape":"String", "documentation":"Next token returned in the response of a previous ListReadSetUploadPartsRequest call. Used to get the next page of results.
", "location":"querystring", "locationName":"nextToken" }, "maxResults":{ "shape":"Integer", "documentation":"The maximum number of shares to return in one page of results.
", "location":"querystring", "locationName":"maxResults" } } }, "ListSharesResponse":{ "type":"structure", "required":["shares"], "members":{ "shares":{ "shape":"ShareDetailsList", "documentation":"The shares available and their metadata details.
" }, "nextToken":{ "shape":"String", "documentation":"Next token returned in the response of a previous ListSharesResponse call. Used to get the next page of results.
" } } }, "ListTagsForResourceRequest":{ "type":"structure", "required":["resourceArn"], "members":{ "resourceArn":{ "shape":"TagArn", "documentation":"The resource's ARN.
", "location":"uri", "locationName":"resourceArn" } } }, "ListTagsForResourceResponse":{ "type":"structure", "required":["tags"], "members":{ "tags":{ "shape":"TagMap", "documentation":"A list of tags.
" } } }, "ListToken":{ "type":"string", "max":128, "min":1, "pattern":"[\\p{L}||\\p{M}||\\p{Z}||\\p{S}||\\p{N}||\\p{P}]+" }, "ListVariantImportJobsFilter":{ "type":"structure", "members":{ "status":{ "shape":"JobStatus", "documentation":"A status to filter on.
" }, "storeName":{ "shape":"String", "documentation":"A store name to filter on.
" } }, "documentation":"A filter for variant import jobs.
" }, "ListVariantImportJobsRequest":{ "type":"structure", "members":{ "maxResults":{ "shape":"ListVariantImportJobsRequestMaxResultsInteger", "documentation":"The maximum number of import jobs to return in one page of results.
", "location":"querystring", "locationName":"maxResults" }, "ids":{ "shape":"ListVariantImportJobsRequestIdsList", "documentation":"A list of job IDs.
" }, "nextToken":{ "shape":"ListVariantImportJobsRequestNextTokenString", "documentation":"Specify the pagination token from a previous request to retrieve the next page of results.
", "location":"querystring", "locationName":"nextToken" }, "filter":{ "shape":"ListVariantImportJobsFilter", "documentation":"A filter to apply to the list.
" } } }, "ListVariantImportJobsRequestIdsList":{ "type":"list", "member":{"shape":"ResourceIdentifier"}, "max":20, "min":1 }, "ListVariantImportJobsRequestMaxResultsInteger":{ "type":"integer", "box":true, "max":100, "min":1 }, "ListVariantImportJobsRequestNextTokenString":{ "type":"string", "max":10000, "min":1 }, "ListVariantImportJobsResponse":{ "type":"structure", "members":{ "variantImportJobs":{ "shape":"VariantImportJobItems", "documentation":"A list of jobs.
" }, "nextToken":{ "shape":"String", "documentation":"A pagination token that's included if more results are available.
" } } }, "ListVariantStoresFilter":{ "type":"structure", "members":{ "status":{ "shape":"StoreStatus", "documentation":"A status to filter on.
" } }, "documentation":"A filter for variant stores.
" }, "ListVariantStoresRequest":{ "type":"structure", "members":{ "maxResults":{ "shape":"ListVariantStoresRequestMaxResultsInteger", "documentation":"The maximum number of stores to return in one page of results.
", "location":"querystring", "locationName":"maxResults" }, "ids":{ "shape":"ListVariantStoresRequestIdsList", "documentation":"A list of store IDs.
" }, "nextToken":{ "shape":"ListVariantStoresRequestNextTokenString", "documentation":"Specify the pagination token from a previous request to retrieve the next page of results.
", "location":"querystring", "locationName":"nextToken" }, "filter":{ "shape":"ListVariantStoresFilter", "documentation":"A filter to apply to the list.
" } } }, "ListVariantStoresRequestIdsList":{ "type":"list", "member":{"shape":"ResourceIdentifier"}, "max":20, "min":1 }, "ListVariantStoresRequestMaxResultsInteger":{ "type":"integer", "box":true, "max":100, "min":1 }, "ListVariantStoresRequestNextTokenString":{ "type":"string", "max":10000, "min":1 }, "ListVariantStoresResponse":{ "type":"structure", "members":{ "variantStores":{ "shape":"VariantStoreItems", "documentation":"A list of variant stores.
" }, "nextToken":{ "shape":"String", "documentation":"A pagination token that's included if more results are available.
" } } }, "ListWorkflowsRequest":{ "type":"structure", "members":{ "type":{ "shape":"WorkflowType", "documentation":"Filter the list by workflow type.
", "location":"querystring", "locationName":"type" }, "name":{ "shape":"WorkflowName", "documentation":"Filter the list by workflow name.
", "location":"querystring", "locationName":"name" }, "startingToken":{ "shape":"WorkflowListToken", "documentation":"Specify the pagination token from a previous request to retrieve the next page of results.
", "location":"querystring", "locationName":"startingToken" }, "maxResults":{ "shape":"ListWorkflowsRequestMaxResultsInteger", "documentation":"The maximum number of workflows to return in one page of results.
", "location":"querystring", "locationName":"maxResults" } } }, "ListWorkflowsRequestMaxResultsInteger":{ "type":"integer", "box":true, "max":100, "min":1 }, "ListWorkflowsResponse":{ "type":"structure", "members":{ "items":{ "shape":"WorkflowList", "documentation":"A list of workflow items.
" }, "nextToken":{ "shape":"WorkflowListToken", "documentation":"A pagination token that's included if more results are available.
" } } }, "Long":{ "type":"long", "box":true }, "Md5":{ "type":"string", "max":255, "min":1, "pattern":"[\\p{L}||\\p{N}]+" }, "MultipartReadSetUploadList":{ "type":"list", "member":{"shape":"MultipartReadSetUploadListItem"} }, "MultipartReadSetUploadListItem":{ "type":"structure", "required":[ "sequenceStoreId", "uploadId", "sourceFileType", "subjectId", "sampleId", "generatedFrom", "referenceArn", "creationTime" ], "members":{ "sequenceStoreId":{ "shape":"SequenceStoreId", "documentation":"The sequence store ID used for the multipart upload.
" }, "uploadId":{ "shape":"UploadId", "documentation":"The ID for the initiated multipart upload.
" }, "sourceFileType":{ "shape":"FileType", "documentation":"The type of file the read set originated from.
" }, "subjectId":{ "shape":"SubjectId", "documentation":"The read set source's subject ID.
" }, "sampleId":{ "shape":"SampleId", "documentation":"The read set source's sample ID.
" }, "generatedFrom":{ "shape":"GeneratedFrom", "documentation":"The source of an uploaded part.
" }, "referenceArn":{ "shape":"ReferenceArn", "documentation":"The source's reference ARN.
" }, "name":{ "shape":"ReadSetName", "documentation":"The name of a read set.
" }, "description":{ "shape":"ReadSetDescription", "documentation":"The description of a read set.
" }, "tags":{ "shape":"TagMap", "documentation":"Any tags you wish to add to a read set.
" }, "creationTime":{ "shape":"SyntheticTimestamp_date_time", "documentation":"The time stamp for when a direct upload was created.
" } }, "documentation":"Part of the response to ListMultipartReadSetUploads, excluding completed and aborted multipart uploads.
" }, "NextToken":{ "type":"string", "max":6144, "min":1, "pattern":"[\\p{L}||\\p{M}||\\p{Z}||\\p{S}||\\p{N}||\\p{P}]+" }, "NotSupportedOperationException":{ "type":"structure", "required":["message"], "members":{ "message":{"shape":"String"} }, "documentation":"The operation is not supported by Amazon Omics, or the API does not exist.
", "error":{ "httpStatusCode":405, "senderFault":true }, "exception":true }, "NumericIdInArn":{ "type":"string", "max":18, "min":1, "pattern":"[0-9]+" }, "PrimitiveBoolean":{"type":"boolean"}, "PropagatedSetLevelTags":{ "type":"list", "member":{"shape":"TagKey"}, "max":50, "min":0 }, "PutS3AccessPolicyRequest":{ "type":"structure", "required":[ "s3AccessPointArn", "s3AccessPolicy" ], "members":{ "s3AccessPointArn":{ "shape":"S3AccessPointArn", "documentation":"The S3 access point ARN where you want to put the access policy.
", "location":"uri", "locationName":"s3AccessPointArn" }, "s3AccessPolicy":{ "shape":"S3AccessPolicy", "documentation":"The resource policy that controls S3 access to the store.
", "jsonvalue":true } } }, "PutS3AccessPolicyResponse":{ "type":"structure", "members":{ "s3AccessPointArn":{ "shape":"S3AccessPointArn", "documentation":"The S3 access point ARN that now has the access policy.
" }, "storeId":{ "shape":"StoreId", "documentation":"The AWS-generated Sequence Store or Reference Store ID.
" }, "storeType":{ "shape":"StoreType", "documentation":"The type of store associated with the access point.
" } } }, "Quote":{ "type":"string", "max":1, "min":1 }, "QuoteAll":{"type":"boolean"}, "Range":{ "type":"string", "max":127, "min":1, "pattern":"[\\p{N}||\\p{P}]+" }, "RangeNotSatisfiableException":{ "type":"structure", "required":["message"], "members":{ "message":{"shape":"String"} }, "documentation":"The ranges specified in the request are not valid.
", "error":{ "httpStatusCode":416, "senderFault":true }, "exception":true, "retryable":{"throttling":false} }, "ReadOptions":{ "type":"structure", "members":{ "sep":{ "shape":"Separator", "documentation":"The file's field separator.
" }, "encoding":{ "shape":"Encoding", "documentation":"The file's encoding.
" }, "quote":{ "shape":"Quote", "documentation":"The file's quote character.
" }, "quoteAll":{ "shape":"QuoteAll", "documentation":"Whether all values need to be quoted, or just those that contain quotes.
" }, "escape":{ "shape":"EscapeChar", "documentation":"A character for escaping quotes in the file.
" }, "escapeQuotes":{ "shape":"EscapeQuotes", "documentation":"Whether quotes need to be escaped in the file.
" }, "comment":{ "shape":"CommentChar", "documentation":"The file's comment character.
" }, "header":{ "shape":"Header", "documentation":"Whether the file has a header row.
" }, "lineSep":{ "shape":"LineSep", "documentation":"A line separator for the file.
" } }, "documentation":"Read options for an annotation import job.
" }, "ReadSetActivationJobItemStatus":{ "type":"string", "enum":[ "NOT_STARTED", "IN_PROGRESS", "FINISHED", "FAILED" ] }, "ReadSetActivationJobStatus":{ "type":"string", "enum":[ "SUBMITTED", "IN_PROGRESS", "CANCELLING", "CANCELLED", "FAILED", "COMPLETED", "COMPLETED_WITH_FAILURES" ] }, "ReadSetArn":{ "type":"string", "max":127, "min":1, "pattern":"arn:.+" }, "ReadSetBatchError":{ "type":"structure", "required":[ "id", "code", "message" ], "members":{ "id":{ "shape":"ReadSetId", "documentation":"The error's ID.
" }, "code":{ "shape":"String", "documentation":"The error's code.
" }, "message":{ "shape":"String", "documentation":"The error's message.
" } }, "documentation":"An error from a batch read set operation.
" }, "ReadSetBatchErrorList":{ "type":"list", "member":{"shape":"ReadSetBatchError"} }, "ReadSetDescription":{ "type":"string", "max":255, "min":1, "pattern":"[\\p{L}||\\p{M}||\\p{Z}||\\p{S}||\\p{N}||\\p{P}]+" }, "ReadSetExportJobItemStatus":{ "type":"string", "enum":[ "NOT_STARTED", "IN_PROGRESS", "FINISHED", "FAILED" ] }, "ReadSetExportJobStatus":{ "type":"string", "enum":[ "SUBMITTED", "IN_PROGRESS", "CANCELLING", "CANCELLED", "FAILED", "COMPLETED", "COMPLETED_WITH_FAILURES" ] }, "ReadSetFile":{ "type":"string", "enum":[ "SOURCE1", "SOURCE2", "INDEX" ] }, "ReadSetFiles":{ "type":"structure", "members":{ "source1":{ "shape":"FileInformation", "documentation":"The location of the first file in Amazon S3.
" }, "source2":{ "shape":"FileInformation", "documentation":"The location of the second file in Amazon S3.
" }, "index":{ "shape":"FileInformation", "documentation":"The files' index.
" } }, "documentation":"Files in a read set.
" }, "ReadSetFilter":{ "type":"structure", "members":{ "name":{ "shape":"ReadSetName", "documentation":"A name to filter on.
" }, "status":{ "shape":"ReadSetStatus", "documentation":"A status to filter on.
" }, "referenceArn":{ "shape":"ReferenceArnFilter", "documentation":"A genome reference ARN to filter on.
" }, "createdAfter":{ "shape":"SyntheticTimestamp_date_time", "documentation":"The filter's start date.
" }, "createdBefore":{ "shape":"SyntheticTimestamp_date_time", "documentation":"The filter's end date.
" }, "sampleId":{ "shape":"SampleId", "documentation":"The read set source's sample ID.
" }, "subjectId":{ "shape":"SubjectId", "documentation":"The read set source's subject ID.
" }, "generatedFrom":{ "shape":"GeneratedFrom", "documentation":"Where the source originated.
" }, "creationType":{ "shape":"CreationType", "documentation":"The creation type of the read set.
" } }, "documentation":"A filter for read sets.
" }, "ReadSetId":{ "type":"string", "max":36, "min":10, "pattern":"[0-9]+" }, "ReadSetIdList":{ "type":"list", "member":{"shape":"ReadSetId"}, "max":100, "min":1 }, "ReadSetImportJobItemStatus":{ "type":"string", "enum":[ "NOT_STARTED", "IN_PROGRESS", "FINISHED", "FAILED" ] }, "ReadSetImportJobStatus":{ "type":"string", "enum":[ "SUBMITTED", "IN_PROGRESS", "CANCELLING", "CANCELLED", "FAILED", "COMPLETED", "COMPLETED_WITH_FAILURES" ] }, "ReadSetList":{ "type":"list", "member":{"shape":"ReadSetListItem"} }, "ReadSetListItem":{ "type":"structure", "required":[ "id", "arn", "sequenceStoreId", "status", "fileType", "creationTime" ], "members":{ "id":{ "shape":"ReadSetId", "documentation":"The read set's ID.
" }, "arn":{ "shape":"ReadSetArn", "documentation":"The read set's ARN.
" }, "sequenceStoreId":{ "shape":"SequenceStoreId", "documentation":"The read set's sequence store ID.
" }, "subjectId":{ "shape":"SubjectId", "documentation":"The read set's subject ID.
" }, "sampleId":{ "shape":"SampleId", "documentation":"The read set's sample ID.
" }, "status":{ "shape":"ReadSetStatus", "documentation":"The read set's status.
" }, "name":{ "shape":"ReadSetName", "documentation":"The read set's name.
" }, "description":{ "shape":"ReadSetDescription", "documentation":"The read set's description.
" }, "referenceArn":{ "shape":"ReferenceArn", "documentation":"The read set's genome reference ARN.
" }, "fileType":{ "shape":"FileType", "documentation":"The read set's file type.
" }, "sequenceInformation":{"shape":"SequenceInformation"}, "creationTime":{ "shape":"SyntheticTimestamp_date_time", "documentation":"When the read set was created.
" }, "statusMessage":{ "shape":"ReadSetStatusMessage", "documentation":"The status for a read set. It provides more detail as to why the read set has a status.
" }, "creationType":{ "shape":"CreationType", "documentation":"The creation type of the read set.
" }, "etag":{ "shape":"ETag", "documentation":"The entity tag (ETag) is a hash of the object representing its semantic content.
" } }, "documentation":"A read set.
" }, "ReadSetName":{ "type":"string", "max":127, "min":1, "pattern":"[\\p{L}||\\p{M}||\\p{Z}||\\p{S}||\\p{N}||\\p{P}]+" }, "ReadSetPartSource":{ "type":"string", "enum":[ "SOURCE1", "SOURCE2" ] }, "ReadSetPartStreamingBlob":{ "type":"blob", "requiresLength":true, "streaming":true }, "ReadSetS3Access":{ "type":"structure", "members":{ "s3Uri":{ "shape":"S3Uri", "documentation":"The S3 URI for each read set file.
" } }, "documentation":"The S3 URI for each read set file.
" }, "ReadSetStatus":{ "type":"string", "enum":[ "ARCHIVED", "ACTIVATING", "ACTIVE", "DELETING", "DELETED", "PROCESSING_UPLOAD", "UPLOAD_FAILED" ] }, "ReadSetStatusMessage":{ "type":"string", "max":255, "min":1, "pattern":"[\\p{L}||\\p{M}||\\p{Z}||\\p{S}||\\p{N}||\\p{P}]+" }, "ReadSetStreamingBlob":{ "type":"blob", "streaming":true }, "ReadSetUploadPartList":{ "type":"list", "member":{"shape":"ReadSetUploadPartListItem"} }, "ReadSetUploadPartListFilter":{ "type":"structure", "members":{ "createdAfter":{ "shape":"SyntheticTimestamp_date_time", "documentation":"Filters for read set uploads after a specified time.
" }, "createdBefore":{ "shape":"SyntheticTimestamp_date_time", "documentation":"Filters for read set part uploads before a specified time.
" } }, "documentation":"Filter settings that select for read set upload parts of interest.
" }, "ReadSetUploadPartListItem":{ "type":"structure", "required":[ "partNumber", "partSize", "partSource", "checksum" ], "members":{ "partNumber":{ "shape":"ReadSetUploadPartListItemPartNumberInteger", "documentation":"The number identifying the part in an upload.
" }, "partSize":{ "shape":"ReadSetUploadPartListItemPartSizeLong", "documentation":"The size of the the part in an upload.
" }, "partSource":{ "shape":"ReadSetPartSource", "documentation":"The origin of the part being direct uploaded.
" }, "checksum":{ "shape":"String", "documentation":"A unique identifier used to confirm that parts are being added to the correct upload.
" }, "creationTime":{ "shape":"SyntheticTimestamp_date_time", "documentation":"The time stamp for when a direct upload was created.
" }, "lastUpdatedTime":{ "shape":"SyntheticTimestamp_date_time", "documentation":"The time stamp for the most recent update to an uploaded part.
" } }, "documentation":"The metadata of a single part of a file that was added to a multipart upload. A list of these parts is returned in the response to the ListReadSetUploadParts API.
" }, "ReadSetUploadPartListItemPartNumberInteger":{ "type":"integer", "box":true, "max":10000, "min":1 }, "ReadSetUploadPartListItemPartSizeLong":{ "type":"long", "box":true, "max":5368709120, "min":1 }, "ReferenceArn":{ "type":"string", "max":127, "min":1, "pattern":"arn:.+" }, "ReferenceArnFilter":{ "type":"string", "max":127, "min":0, "pattern":"$|^arn:.+" }, "ReferenceCreationType":{ "type":"string", "enum":["IMPORT"] }, "ReferenceDescription":{ "type":"string", "max":255, "min":1, "pattern":"[\\p{L}||\\p{M}||\\p{Z}||\\p{S}||\\p{N}||\\p{P}]+" }, "ReferenceFile":{ "type":"string", "enum":[ "SOURCE", "INDEX" ] }, "ReferenceFiles":{ "type":"structure", "members":{ "source":{ "shape":"FileInformation", "documentation":"The source file's location in Amazon S3.
" }, "index":{ "shape":"FileInformation", "documentation":"The files' index.
" } }, "documentation":"A set of genome reference files.
" }, "ReferenceFilter":{ "type":"structure", "members":{ "name":{ "shape":"ReferenceName", "documentation":"A name to filter on.
" }, "md5":{ "shape":"Md5", "documentation":"An MD5 checksum to filter on.
" }, "createdAfter":{ "shape":"SyntheticTimestamp_date_time", "documentation":"The filter's start date.
" }, "createdBefore":{ "shape":"SyntheticTimestamp_date_time", "documentation":"The filter's end date.
" } }, "documentation":"A filter for references.
" }, "ReferenceId":{ "type":"string", "max":36, "min":10, "pattern":"[0-9]+" }, "ReferenceImportJobItemStatus":{ "type":"string", "enum":[ "NOT_STARTED", "IN_PROGRESS", "FINISHED", "FAILED" ] }, "ReferenceImportJobStatus":{ "type":"string", "enum":[ "SUBMITTED", "IN_PROGRESS", "CANCELLING", "CANCELLED", "FAILED", "COMPLETED", "COMPLETED_WITH_FAILURES" ] }, "ReferenceItem":{ "type":"structure", "members":{ "referenceArn":{ "shape":"ReferenceArn", "documentation":"The reference's ARN.
" } }, "documentation":"A genome reference.
", "union":true }, "ReferenceList":{ "type":"list", "member":{"shape":"ReferenceListItem"} }, "ReferenceListItem":{ "type":"structure", "required":[ "id", "arn", "referenceStoreId", "md5", "creationTime", "updateTime" ], "members":{ "id":{ "shape":"ReferenceId", "documentation":"The reference's ID.
" }, "arn":{ "shape":"ReferenceArn", "documentation":"The reference's ARN.
" }, "referenceStoreId":{ "shape":"ReferenceStoreId", "documentation":"The reference's store ID.
" }, "md5":{ "shape":"Md5", "documentation":"The reference's MD5 checksum.
" }, "status":{ "shape":"ReferenceStatus", "documentation":"The reference's status.
" }, "name":{ "shape":"ReferenceName", "documentation":"The reference's name.
" }, "description":{ "shape":"ReferenceDescription", "documentation":"The reference's description.
" }, "creationTime":{ "shape":"SyntheticTimestamp_date_time", "documentation":"When the reference was created.
" }, "updateTime":{ "shape":"SyntheticTimestamp_date_time", "documentation":"When the reference was updated.
" } }, "documentation":"A genome reference.
" }, "ReferenceName":{ "type":"string", "max":255, "min":3, "pattern":"[\\p{L}||\\p{M}||\\p{Z}||\\p{S}||\\p{N}||\\p{P}]+" }, "ReferenceStatus":{ "type":"string", "enum":[ "ACTIVE", "DELETING", "DELETED" ] }, "ReferenceStoreArn":{ "type":"string", "max":127, "min":1, "pattern":"arn:.+" }, "ReferenceStoreDescription":{ "type":"string", "max":255, "min":1, "pattern":"[\\p{L}||\\p{M}||\\p{Z}||\\p{S}||\\p{N}||\\p{P}]+" }, "ReferenceStoreDetail":{ "type":"structure", "required":[ "arn", "id", "creationTime" ], "members":{ "arn":{ "shape":"ReferenceStoreArn", "documentation":"The store's ARN.
" }, "id":{ "shape":"ReferenceStoreId", "documentation":"The store's ID.
" }, "name":{ "shape":"ReferenceStoreName", "documentation":"The store's name.
" }, "description":{ "shape":"ReferenceStoreDescription", "documentation":"The store's description.
" }, "sseConfig":{ "shape":"SseConfig", "documentation":"The store's server-side encryption (SSE) settings.
" }, "creationTime":{ "shape":"SyntheticTimestamp_date_time", "documentation":"When the store was created.
" } }, "documentation":"Details about a reference store.
" }, "ReferenceStoreDetailList":{ "type":"list", "member":{"shape":"ReferenceStoreDetail"} }, "ReferenceStoreFilter":{ "type":"structure", "members":{ "name":{ "shape":"ReferenceStoreName", "documentation":"The name to filter on.
" }, "createdAfter":{ "shape":"SyntheticTimestamp_date_time", "documentation":"The filter's start date.
" }, "createdBefore":{ "shape":"SyntheticTimestamp_date_time", "documentation":"The filter's end date.
" } }, "documentation":"A filter for reference stores.
" }, "ReferenceStoreId":{ "type":"string", "max":36, "min":10, "pattern":"[0-9]+" }, "ReferenceStoreName":{ "type":"string", "max":127, "min":1, "pattern":"[\\p{L}||\\p{M}||\\p{Z}||\\p{S}||\\p{N}||\\p{P}]+" }, "ReferenceStreamingBlob":{ "type":"blob", "streaming":true }, "RequestTimeoutException":{ "type":"structure", "required":["message"], "members":{ "message":{"shape":"String"} }, "documentation":"The request timed out.
", "error":{ "httpStatusCode":408, "senderFault":true }, "exception":true }, "ResourceId":{ "type":"string", "pattern":"[a-f0-9]{8}-[a-f0-9]{4}-[a-f0-9]{4}-[a-f0-9]{4}-[a-f0-9]{12}" }, "ResourceIdentifier":{ "type":"string", "max":50, "min":1 }, "ResourceNotFoundException":{ "type":"structure", "required":["message"], "members":{ "message":{"shape":"String"} }, "documentation":"The target resource was not found in the current Region.
", "error":{ "httpStatusCode":404, "senderFault":true }, "exception":true }, "ResourceOwner":{ "type":"string", "enum":[ "SELF", "OTHER" ] }, "RoleArn":{ "type":"string", "max":2048, "min":20, "pattern":"arn:.*" }, "RunArn":{ "type":"string", "max":128, "min":1, "pattern":"arn:.+" }, "RunCacheArn":{ "type":"string", "max":128, "min":1, "pattern":"arn:.+" }, "RunCacheId":{ "type":"string", "max":18, "min":1, "pattern":"[0-9]+" }, "RunCacheList":{ "type":"list", "member":{"shape":"RunCacheListItem"} }, "RunCacheListItem":{ "type":"structure", "members":{ "arn":{ "shape":"RunCacheArn", "documentation":"Unique resource identifier for the run cache.
" }, "cacheBehavior":{ "shape":"CacheBehavior", "documentation":"Default cache behavior for the run cache.
" }, "cacheS3Uri":{ "shape":"S3UriForBucketOrObject", "documentation":"The S3 uri for the run cache data.
" }, "creationTime":{ "shape":"RunCacheTimestamp", "documentation":"The time that this run cache was created (an ISO 8601 formatted string).
" }, "id":{ "shape":"RunCacheId", "documentation":"The identifier for this run cache.
" }, "name":{ "shape":"UserCustomName", "documentation":"The name of the run cache.
" }, "status":{ "shape":"RunCacheStatus", "documentation":"The run cache status.
" } }, "documentation":"List entry for one run cache.
" }, "RunCacheRequestId":{ "type":"string", "max":128, "min":1, "pattern":"[\\p{L}||\\p{M}||\\p{Z}||\\p{S}||\\p{N}||\\p{P}]+" }, "RunCacheStatus":{ "type":"string", "enum":[ "ACTIVE", "DELETED", "FAILED" ], "max":64, "min":1 }, "RunCacheTimestamp":{ "type":"timestamp", "timestampFormat":"iso8601" }, "RunExport":{ "type":"string", "enum":["DEFINITION"], "max":64, "min":1 }, "RunExportList":{ "type":"list", "member":{"shape":"RunExport"}, "max":32, "min":0 }, "RunFailureReason":{ "type":"string", "max":64, "min":1, "pattern":"[\\p{L}||\\p{M}||\\p{Z}||\\p{S}||\\p{N}||\\p{P}]+" }, "RunGroupArn":{ "type":"string", "max":128, "min":1, "pattern":"arn:.+" }, "RunGroupId":{ "type":"string", "max":18, "min":1, "pattern":"[0-9]+" }, "RunGroupList":{ "type":"list", "member":{"shape":"RunGroupListItem"} }, "RunGroupListItem":{ "type":"structure", "members":{ "arn":{ "shape":"RunGroupArn", "documentation":"The group's ARN.
" }, "id":{ "shape":"RunGroupId", "documentation":"The group's ID.
" }, "name":{ "shape":"RunGroupName", "documentation":"The group's name.
" }, "maxCpus":{ "shape":"RunGroupListItemMaxCpusInteger", "documentation":"The group's maximum CPU count setting.
" }, "maxRuns":{ "shape":"RunGroupListItemMaxRunsInteger", "documentation":"The group's maximum concurrent run setting.
" }, "maxDuration":{ "shape":"RunGroupListItemMaxDurationInteger", "documentation":"The group's maximum duration setting in minutes.
" }, "creationTime":{ "shape":"RunGroupTimestamp", "documentation":"When the group was created.
" }, "maxGpus":{ "shape":"RunGroupListItemMaxGpusInteger", "documentation":"The maximum GPUs that can be used by a run group.
" } }, "documentation":"A run group.
" }, "RunGroupListItemMaxCpusInteger":{ "type":"integer", "box":true, "max":100000, "min":1 }, "RunGroupListItemMaxDurationInteger":{ "type":"integer", "box":true, "max":100000, "min":1 }, "RunGroupListItemMaxGpusInteger":{ "type":"integer", "box":true, "max":100000, "min":1 }, "RunGroupListItemMaxRunsInteger":{ "type":"integer", "box":true, "max":100000, "min":1 }, "RunGroupListToken":{ "type":"string", "max":128, "min":1, "pattern":"[\\p{L}||\\p{M}||\\p{Z}||\\p{S}||\\p{N}||\\p{P}]+" }, "RunGroupName":{ "type":"string", "max":128, "min":1, "pattern":"[\\p{L}||\\p{M}||\\p{Z}||\\p{S}||\\p{N}||\\p{P}]+" }, "RunGroupRequestId":{ "type":"string", "max":128, "min":1, "pattern":"[\\p{L}||\\p{M}||\\p{Z}||\\p{S}||\\p{N}||\\p{P}]+" }, "RunGroupTimestamp":{ "type":"timestamp", "timestampFormat":"iso8601" }, "RunId":{ "type":"string", "max":18, "min":1, "pattern":"[0-9]+" }, "RunLeftNormalization":{"type":"boolean"}, "RunList":{ "type":"list", "member":{"shape":"RunListItem"} }, "RunListItem":{ "type":"structure", "members":{ "arn":{ "shape":"RunArn", "documentation":"The run's ARN.
" }, "id":{ "shape":"RunId", "documentation":"The run's ID.
" }, "status":{ "shape":"RunStatus", "documentation":"The run's status.
" }, "workflowId":{ "shape":"WorkflowId", "documentation":"The run's workflow ID.
" }, "name":{ "shape":"RunName", "documentation":"The run's name.
" }, "priority":{ "shape":"RunListItemPriorityInteger", "documentation":"The run's priority.
" }, "storageCapacity":{ "shape":"RunListItemStorageCapacityInteger", "documentation":"The run's storage capacity in gibibytes. For dynamic storage, after the run has completed, this value is the maximum amount of storage used during the run.
" }, "creationTime":{ "shape":"RunTimestamp", "documentation":"When the run was created.
" }, "startTime":{ "shape":"RunTimestamp", "documentation":"When the run started.
" }, "stopTime":{ "shape":"RunTimestamp", "documentation":"When the run stopped.
" }, "storageType":{ "shape":"StorageType", "documentation":"The run's storage type.
" } }, "documentation":"A workflow run.
" }, "RunListItemPriorityInteger":{ "type":"integer", "box":true, "max":100000, "min":0 }, "RunListItemStorageCapacityInteger":{ "type":"integer", "box":true, "max":100000, "min":0 }, "RunListToken":{ "type":"string", "max":128, "min":1, "pattern":"[\\p{L}||\\p{M}||\\p{Z}||\\p{S}||\\p{N}||\\p{P}]+" }, "RunLogLevel":{ "type":"string", "enum":[ "OFF", "FATAL", "ERROR", "ALL" ], "max":64, "min":1 }, "RunLogLocation":{ "type":"structure", "members":{ "engineLogStream":{ "shape":"EngineLogStream", "documentation":"The log stream ARN for the engine log.
" }, "runLogStream":{ "shape":"RunLogStream", "documentation":"The log stream ARN for the run log.
" } }, "documentation":"The URI for the run log.
" }, "RunLogStream":{ "type":"string", "pattern":"[\\p{L}||\\p{M}||\\p{Z}||\\p{S}||\\p{N}||\\p{P}]+" }, "RunName":{ "type":"string", "max":128, "min":1, "pattern":"[\\p{L}||\\p{M}||\\p{Z}||\\p{S}||\\p{N}||\\p{P}]+" }, "RunOutputUri":{ "type":"string", "max":750, "min":1, "pattern":"[\\p{L}||\\p{M}||\\p{Z}||\\p{S}||\\p{N}||\\p{P}]+" }, "RunParameters":{ "type":"structure", "members":{ }, "document":true }, "RunRequestId":{ "type":"string", "max":128, "min":1, "pattern":"[\\p{L}||\\p{M}||\\p{Z}||\\p{S}||\\p{N}||\\p{P}]+" }, "RunResourceDigest":{ "type":"string", "max":64, "min":0, "pattern":"[\\p{L}||\\p{M}||\\p{Z}||\\p{S}||\\p{N}||\\p{P}]+" }, "RunResourceDigestKey":{ "type":"string", "max":256, "min":1, "pattern":"[\\p{L}||\\p{M}||\\p{Z}||\\p{S}||\\p{N}||\\p{P}]+" }, "RunResourceDigests":{ "type":"map", "key":{"shape":"RunResourceDigestKey"}, "value":{"shape":"RunResourceDigest"} }, "RunRetentionMode":{ "type":"string", "enum":[ "RETAIN", "REMOVE" ], "max":64, "min":1 }, "RunRoleArn":{ "type":"string", "max":128, "min":1, "pattern":"arn:.+" }, "RunStartedBy":{ "type":"string", "max":128, "min":1 }, "RunStatus":{ "type":"string", "enum":[ "PENDING", "STARTING", "RUNNING", "STOPPING", "COMPLETED", "DELETED", "CANCELLED", "FAILED" ], "max":64, "min":1 }, "RunStatusMessage":{ "type":"string", "pattern":"[\\p{L}||\\p{M}||\\p{Z}||\\p{S}||\\p{N}||\\p{P}]+" }, "RunTimestamp":{ "type":"timestamp", "timestampFormat":"iso8601" }, "RunUuid":{ "type":"string", "max":128, "min":1, "pattern":"[\\p{L}||\\p{M}||\\p{Z}||\\p{S}||\\p{N}||\\p{P}]+" }, "S3AccessConfig":{ "type":"structure", "members":{ "accessLogLocation":{ "shape":"AccessLogLocation", "documentation":"Location of the access logs.
" } }, "documentation":"S3 access configuration parameters.
" }, "S3AccessPointArn":{ "type":"string", "max":1024, "min":1, "pattern":"arn:[^:]*:s3:[^:]*:[^:]*:accesspoint/.*" }, "S3AccessPolicy":{ "type":"string", "max":100000, "min":1 }, "S3Destination":{ "type":"string", "pattern":"s3://([a-z0-9][a-z0-9-.]{1,61}[a-z0-9])/?((.{1,1024})/)?" }, "S3Uri":{ "type":"string", "pattern":"s3://([a-z0-9][a-z0-9-.]{1,61}[a-z0-9])/(.{1,1024})" }, "S3UriForBucketOrObject":{ "type":"string", "documentation":"Uri to a S3 object or bucket
", "pattern":"s3://([a-z0-9][a-z0-9-.]{1,61}[a-z0-9])(/(.{0,1024}))?" }, "SampleId":{ "type":"string", "max":127, "min":1, "pattern":"[\\p{L}||\\p{M}||\\p{Z}||\\p{S}||\\p{N}||\\p{P}]+" }, "SchemaItem":{ "type":"map", "key":{"shape":"SchemaItemKeyString"}, "value":{"shape":"SchemaValueType"}, "max":1, "min":1 }, "SchemaItemKeyString":{ "type":"string", "pattern":"[a-z0-9_]{1,255}" }, "SchemaValueType":{ "type":"string", "enum":[ "LONG", "INT", "STRING", "FLOAT", "DOUBLE", "BOOLEAN" ] }, "Separator":{ "type":"string", "max":20, "min":1 }, "SequenceInformation":{ "type":"structure", "members":{ "totalReadCount":{ "shape":"Long", "documentation":"The sequence's total read count.
" }, "totalBaseCount":{ "shape":"Long", "documentation":"The sequence's total base count.
" }, "generatedFrom":{ "shape":"GeneratedFrom", "documentation":"Where the sequence originated.
" }, "alignment":{ "shape":"String", "documentation":"The sequence's alignment setting.
" } }, "documentation":"Details about a sequence.
" }, "SequenceStoreArn":{ "type":"string", "max":127, "min":1, "pattern":"arn:.+" }, "SequenceStoreDescription":{ "type":"string", "max":255, "min":1, "pattern":"[\\p{L}||\\p{M}||\\p{Z}||\\p{S}||\\p{N}||\\p{P}]+" }, "SequenceStoreDetail":{ "type":"structure", "required":[ "arn", "id", "creationTime" ], "members":{ "arn":{ "shape":"SequenceStoreArn", "documentation":"The store's ARN.
" }, "id":{ "shape":"SequenceStoreId", "documentation":"The store's ID.
" }, "name":{ "shape":"SequenceStoreName", "documentation":"The store's name.
" }, "description":{ "shape":"SequenceStoreDescription", "documentation":"The store's description.
" }, "sseConfig":{ "shape":"SseConfig", "documentation":"The store's server-side encryption (SSE) settings.
" }, "creationTime":{ "shape":"SyntheticTimestamp_date_time", "documentation":"When the store was created.
" }, "fallbackLocation":{ "shape":"S3Destination", "documentation":"An S3 location that is used to store files that have failed a direct upload.
" }, "eTagAlgorithmFamily":{ "shape":"ETagAlgorithmFamily", "documentation":"The algorithm family of the ETag.
" }, "status":{ "shape":"SequenceStoreStatus", "documentation":"Status of the sequence store.
" }, "statusMessage":{ "shape":"SequenceStoreStatusMessage", "documentation":"The status message of the sequence store.
" }, "updateTime":{ "shape":"SyntheticTimestamp_date_time", "documentation":"The last-updated time of the Sequence Store.
" } }, "documentation":"Details about a sequence store.
" }, "SequenceStoreDetailList":{ "type":"list", "member":{"shape":"SequenceStoreDetail"} }, "SequenceStoreFilter":{ "type":"structure", "members":{ "name":{ "shape":"SequenceStoreName", "documentation":"A name to filter on.
" }, "createdAfter":{ "shape":"SyntheticTimestamp_date_time", "documentation":"The filter's start date.
" }, "createdBefore":{ "shape":"SyntheticTimestamp_date_time", "documentation":"The filter's end date.
" }, "status":{ "shape":"SequenceStoreStatus", "documentation":"Filter results based on status.
" }, "updatedAfter":{ "shape":"SyntheticTimestamp_date_time", "documentation":"Filter results based on stores updated after the specified time.
" }, "updatedBefore":{ "shape":"SyntheticTimestamp_date_time", "documentation":"Filter results based on stores updated before the specified time.
" } }, "documentation":"A filter for a sequence store.
" }, "SequenceStoreId":{ "type":"string", "max":36, "min":10, "pattern":"[0-9]+" }, "SequenceStoreName":{ "type":"string", "max":127, "min":1, "pattern":"[\\p{L}||\\p{M}||\\p{Z}||\\p{S}||\\p{N}||\\p{P}]+" }, "SequenceStoreS3Access":{ "type":"structure", "members":{ "s3Uri":{ "shape":"S3Uri", "documentation":"The S3 URI of the sequence store.
" }, "s3AccessPointArn":{ "shape":"S3AccessPointArn", "documentation":"This is ARN of the access point associated with the S3 bucket storing read sets.
" }, "accessLogLocation":{ "shape":"AccessLogLocation", "documentation":"Location of the access logs.
" } }, "documentation":"The S3 access metadata of the sequence store.
" }, "SequenceStoreStatus":{ "type":"string", "enum":[ "CREATING", "ACTIVE", "UPDATING", "DELETING", "FAILED" ] }, "SequenceStoreStatusMessage":{ "type":"string", "max":127, "min":1, "pattern":"[\\p{L}||\\p{M}||\\p{Z}||\\p{S}||\\p{N}||\\p{P}]+" }, "ServiceQuotaExceededException":{ "type":"structure", "required":["message"], "members":{ "message":{"shape":"String"} }, "documentation":"The request exceeds a service quota.
", "error":{ "httpStatusCode":402, "senderFault":true }, "exception":true }, "ShareDetails":{ "type":"structure", "members":{ "shareId":{ "shape":"String", "documentation":"The ID of the resource share.
" }, "resourceArn":{ "shape":"String", "documentation":"The Arn of the shared resource.
" }, "resourceId":{ "shape":"String", "documentation":"The ID of the shared resource.
" }, "principalSubscriber":{ "shape":"String", "documentation":"The principal subscriber is the account that is sharing the resource.
" }, "ownerId":{ "shape":"String", "documentation":"The account ID for the data owner. The owner creates the resource share.
" }, "status":{ "shape":"ShareStatus", "documentation":"The status of the share.
" }, "statusMessage":{ "shape":"StatusMessage", "documentation":"The status message for a resource share. It provides additional details about the share status.
" }, "shareName":{ "shape":"ShareName", "documentation":"The name of the resource share.
" }, "creationTime":{ "shape":"CreationTime", "documentation":"The timestamp of when the resource share was created.
" }, "updateTime":{ "shape":"UpdateTime", "documentation":"The timestamp of the resource share update.
" } }, "documentation":"The details of a resource share.
" }, "ShareDetailsList":{ "type":"list", "member":{"shape":"ShareDetails"} }, "ShareName":{ "type":"string", "max":256, "min":1, "pattern":"[a-zA-Z0-9_-]+" }, "ShareResourceType":{ "type":"string", "enum":[ "VARIANT_STORE", "ANNOTATION_STORE", "WORKFLOW" ] }, "ShareStatus":{ "type":"string", "enum":[ "PENDING", "ACTIVATING", "ACTIVE", "DELETING", "DELETED", "FAILED" ] }, "SourceFiles":{ "type":"structure", "required":["source1"], "members":{ "source1":{ "shape":"S3Uri", "documentation":"The location of the first file in Amazon S3.
" }, "source2":{ "shape":"S3Uri", "documentation":"The location of the second file in Amazon S3.
" } }, "documentation":"Source files for a sequence.
" }, "SseConfig":{ "type":"structure", "required":["type"], "members":{ "type":{ "shape":"EncryptionType", "documentation":"The encryption type.
" }, "keyArn":{ "shape":"SseConfigKeyArnString", "documentation":"An encryption key ARN.
" } }, "documentation":"Server-side encryption (SSE) settings for a store.
" }, "SseConfigKeyArnString":{ "type":"string", "max":2048, "min":20, "pattern":".*arn:([^: ]*):([^: ]*):([^: ]*):([0-9]{12}):([^: ]*).*" }, "StartAnnotationImportRequest":{ "type":"structure", "required":[ "destinationName", "roleArn", "items" ], "members":{ "destinationName":{ "shape":"StoreName", "documentation":"A destination annotation store for the job.
" }, "roleArn":{ "shape":"Arn", "documentation":"A service role for the job.
" }, "items":{ "shape":"AnnotationImportItemSources", "documentation":"Items to import.
" }, "versionName":{ "shape":"VersionName", "documentation":"The name of the annotation store version.
" }, "formatOptions":{ "shape":"FormatOptions", "documentation":"Formatting options for the annotation file.
" }, "runLeftNormalization":{ "shape":"RunLeftNormalization", "documentation":"The job's left normalization setting.
" }, "annotationFields":{ "shape":"AnnotationFieldMap", "documentation":"The annotation schema generated by the parsed annotation data.
" } } }, "StartAnnotationImportResponse":{ "type":"structure", "required":["jobId"], "members":{ "jobId":{ "shape":"ResourceId", "documentation":"The job's ID.
" } } }, "StartReadSetActivationJobRequest":{ "type":"structure", "required":[ "sequenceStoreId", "sources" ], "members":{ "sequenceStoreId":{ "shape":"SequenceStoreId", "documentation":"The read set's sequence store ID.
", "location":"uri", "locationName":"sequenceStoreId" }, "clientToken":{ "shape":"ClientToken", "documentation":"To ensure that jobs don't run multiple times, specify a unique token for each job.
" }, "sources":{ "shape":"StartReadSetActivationJobRequestSourcesList", "documentation":"The job's source files.
" } } }, "StartReadSetActivationJobRequestSourcesList":{ "type":"list", "member":{"shape":"StartReadSetActivationJobSourceItem"}, "max":20, "min":1 }, "StartReadSetActivationJobResponse":{ "type":"structure", "required":[ "id", "sequenceStoreId", "status", "creationTime" ], "members":{ "id":{ "shape":"ActivationJobId", "documentation":"The job's ID.
" }, "sequenceStoreId":{ "shape":"SequenceStoreId", "documentation":"The read set's sequence store ID.
" }, "status":{ "shape":"ReadSetActivationJobStatus", "documentation":"The job's status.
" }, "creationTime":{ "shape":"SyntheticTimestamp_date_time", "documentation":"When the job was created.
" } } }, "StartReadSetActivationJobSourceItem":{ "type":"structure", "required":["readSetId"], "members":{ "readSetId":{ "shape":"ReadSetId", "documentation":"The source's read set ID.
" } }, "documentation":"A source for a read set activation job.
" }, "StartReadSetExportJobRequest":{ "type":"structure", "required":[ "sequenceStoreId", "destination", "roleArn", "sources" ], "members":{ "sequenceStoreId":{ "shape":"SequenceStoreId", "documentation":"The read set's sequence store ID.
", "location":"uri", "locationName":"sequenceStoreId" }, "destination":{ "shape":"S3Destination", "documentation":"A location for exported files in Amazon S3.
" }, "roleArn":{ "shape":"RoleArn", "documentation":"A service role for the job.
" }, "clientToken":{ "shape":"ClientToken", "documentation":"To ensure that jobs don't run multiple times, specify a unique token for each job.
" }, "sources":{ "shape":"StartReadSetExportJobRequestSourcesList", "documentation":"The job's source files.
" } } }, "StartReadSetExportJobRequestSourcesList":{ "type":"list", "member":{"shape":"ExportReadSet"}, "max":100, "min":1 }, "StartReadSetExportJobResponse":{ "type":"structure", "required":[ "id", "sequenceStoreId", "destination", "status", "creationTime" ], "members":{ "id":{ "shape":"ExportJobId", "documentation":"The job's ID.
" }, "sequenceStoreId":{ "shape":"SequenceStoreId", "documentation":"The read set's sequence store ID.
" }, "destination":{ "shape":"S3Destination", "documentation":"The job's output location.
" }, "status":{ "shape":"ReadSetExportJobStatus", "documentation":"The job's status.
" }, "creationTime":{ "shape":"SyntheticTimestamp_date_time", "documentation":"When the job was created.
" } } }, "StartReadSetImportJobRequest":{ "type":"structure", "required":[ "sequenceStoreId", "roleArn", "sources" ], "members":{ "sequenceStoreId":{ "shape":"SequenceStoreId", "documentation":"The read set's sequence store ID.
", "location":"uri", "locationName":"sequenceStoreId" }, "roleArn":{ "shape":"RoleArn", "documentation":"A service role for the job.
" }, "clientToken":{ "shape":"ClientToken", "documentation":"To ensure that jobs don't run multiple times, specify a unique token for each job.
" }, "sources":{ "shape":"StartReadSetImportJobRequestSourcesList", "documentation":"The job's source files.
" } } }, "StartReadSetImportJobRequestSourcesList":{ "type":"list", "member":{"shape":"StartReadSetImportJobSourceItem"}, "max":100, "min":1 }, "StartReadSetImportJobResponse":{ "type":"structure", "required":[ "id", "sequenceStoreId", "roleArn", "status", "creationTime" ], "members":{ "id":{ "shape":"ImportJobId", "documentation":"The job's ID.
" }, "sequenceStoreId":{ "shape":"SequenceStoreId", "documentation":"The read set's sequence store ID.
" }, "roleArn":{ "shape":"RoleArn", "documentation":"The job's service role ARN.
" }, "status":{ "shape":"ReadSetImportJobStatus", "documentation":"The job's status.
" }, "creationTime":{ "shape":"SyntheticTimestamp_date_time", "documentation":"When the job was created.
" } } }, "StartReadSetImportJobSourceItem":{ "type":"structure", "required":[ "sourceFiles", "sourceFileType", "subjectId", "sampleId" ], "members":{ "sourceFiles":{ "shape":"SourceFiles", "documentation":"The source files' location in Amazon S3.
" }, "sourceFileType":{ "shape":"FileType", "documentation":"The source's file type.
" }, "subjectId":{ "shape":"SubjectId", "documentation":"The source's subject ID.
" }, "sampleId":{ "shape":"SampleId", "documentation":"The source's sample ID.
" }, "generatedFrom":{ "shape":"GeneratedFrom", "documentation":"Where the source originated.
" }, "referenceArn":{ "shape":"ReferenceArn", "documentation":"The source's reference ARN.
" }, "name":{ "shape":"ReadSetName", "documentation":"The source's name.
" }, "description":{ "shape":"ReadSetDescription", "documentation":"The source's description.
" }, "tags":{ "shape":"TagMap", "documentation":"The source's tags.
" } }, "documentation":"A source for a read set import job.
" }, "StartReferenceImportJobRequest":{ "type":"structure", "required":[ "referenceStoreId", "roleArn", "sources" ], "members":{ "referenceStoreId":{ "shape":"ReferenceStoreId", "documentation":"The job's reference store ID.
", "location":"uri", "locationName":"referenceStoreId" }, "roleArn":{ "shape":"RoleArn", "documentation":"A service role for the job.
" }, "clientToken":{ "shape":"ClientToken", "documentation":"To ensure that jobs don't run multiple times, specify a unique token for each job.
" }, "sources":{ "shape":"StartReferenceImportJobRequestSourcesList", "documentation":"The job's source files.
" } } }, "StartReferenceImportJobRequestSourcesList":{ "type":"list", "member":{"shape":"StartReferenceImportJobSourceItem"}, "max":100, "min":1 }, "StartReferenceImportJobResponse":{ "type":"structure", "required":[ "id", "referenceStoreId", "roleArn", "status", "creationTime" ], "members":{ "id":{ "shape":"ImportJobId", "documentation":"The job's ID.
" }, "referenceStoreId":{ "shape":"ReferenceStoreId", "documentation":"The job's reference store ID.
" }, "roleArn":{ "shape":"RoleArn", "documentation":"The job's service role ARN.
" }, "status":{ "shape":"ReferenceImportJobStatus", "documentation":"The job's status.
" }, "creationTime":{ "shape":"SyntheticTimestamp_date_time", "documentation":"When the job was created.
" } } }, "StartReferenceImportJobSourceItem":{ "type":"structure", "required":[ "sourceFile", "name" ], "members":{ "sourceFile":{ "shape":"S3Uri", "documentation":"The source file's location in Amazon S3.
" }, "name":{ "shape":"ReferenceName", "documentation":"The source's name.
" }, "description":{ "shape":"ReferenceDescription", "documentation":"The source's description.
" }, "tags":{ "shape":"TagMap", "documentation":"The source's tags.
" } }, "documentation":"A source for a reference import job.
" }, "StartRunRequest":{ "type":"structure", "required":[ "roleArn", "requestId" ], "members":{ "workflowId":{ "shape":"WorkflowId", "documentation":"The run's workflow ID.
" }, "workflowType":{ "shape":"WorkflowType", "documentation":"The run's workflow type.
" }, "runId":{ "shape":"RunId", "documentation":"The ID of a run to duplicate.
" }, "roleArn":{ "shape":"RunRoleArn", "documentation":"A service role for the run.
" }, "name":{ "shape":"RunName", "documentation":"A name for the run.
" }, "cacheId":{ "shape":"NumericIdInArn", "documentation":"Identifier of the cache associated with this run. If you don't specify a cache ID, no task outputs are cached for this run.
" }, "cacheBehavior":{ "shape":"CacheBehavior", "documentation":"The cache behavior for the run. You specify this value if you want to override the default behavior for the cache. You had set the default value when you created the cache. For more information, see Run cache behavior in the AWS HealthOmics User Guide.
" }, "runGroupId":{ "shape":"RunGroupId", "documentation":"The run's group ID.
" }, "priority":{ "shape":"StartRunRequestPriorityInteger", "documentation":"A priority for the run.
" }, "parameters":{ "shape":"RunParameters", "documentation":"Parameters for the run.
" }, "storageCapacity":{ "shape":"StartRunRequestStorageCapacityInteger", "documentation":"A storage capacity for the run in gibibytes. This field is not required if the storage type is dynamic (the system ignores any value that you enter).
" }, "outputUri":{ "shape":"RunOutputUri", "documentation":"An output URI for the run.
" }, "logLevel":{ "shape":"RunLogLevel", "documentation":"A log level for the run.
" }, "tags":{ "shape":"TagMap", "documentation":"Tags for the run.
" }, "requestId":{ "shape":"RunRequestId", "documentation":"To ensure that requests don't run multiple times, specify a unique ID for each request.
", "idempotencyToken":true }, "retentionMode":{ "shape":"RunRetentionMode", "documentation":"The retention mode for the run. The default value is RETAIN.
HealthOmics stores a fixed number of runs that are available to the console and API. In the default mode (RETAIN), you need to remove runs manually when the number of run exceeds the maximum. If you set the retention mode to REMOVE, HealthOmics automatically removes runs (that have mode set to REMOVE) when the number of run exceeds the maximum. All run logs are available in CloudWatch logs, if you need information about a run that is no longer available to the API.
For more information about retention mode, see Specifying run retention mode in the AWS HealthOmics User Guide.
" }, "storageType":{ "shape":"StorageType", "documentation":"The run's storage type. By default, the run uses STATIC storage type, which allocates a fixed amount of storage. If you set the storage type to DYNAMIC, HealthOmics dynamically scales the storage up or down, based on file system utilization.
" }, "workflowOwnerId":{ "shape":"WorkflowOwnerId", "documentation":"The ID of the workflow owner.
" } } }, "StartRunRequestPriorityInteger":{ "type":"integer", "box":true, "max":100000, "min":0 }, "StartRunRequestStorageCapacityInteger":{ "type":"integer", "box":true, "max":100000, "min":0 }, "StartRunResponse":{ "type":"structure", "members":{ "arn":{ "shape":"RunArn", "documentation":"Unique resource identifier for the run.
" }, "id":{ "shape":"RunId", "documentation":"The run's ID.
" }, "status":{ "shape":"RunStatus", "documentation":"The run's status.
" }, "tags":{ "shape":"TagMap", "documentation":"The run's tags.
" }, "uuid":{ "shape":"RunUuid", "documentation":"The universally unique identifier for a run.
" }, "runOutputUri":{ "shape":"RunOutputUri", "documentation":"The destination for workflow outputs.
" } } }, "StartVariantImportRequest":{ "type":"structure", "required":[ "destinationName", "roleArn", "items" ], "members":{ "destinationName":{ "shape":"StoreName", "documentation":"The destination variant store for the job.
" }, "roleArn":{ "shape":"Arn", "documentation":"A service role for the job.
" }, "items":{ "shape":"VariantImportItemSources", "documentation":"Items to import.
" }, "runLeftNormalization":{ "shape":"RunLeftNormalization", "documentation":"The job's left normalization setting.
" }, "annotationFields":{ "shape":"AnnotationFieldMap", "documentation":"The annotation schema generated by the parsed annotation data.
" } } }, "StartVariantImportResponse":{ "type":"structure", "required":["jobId"], "members":{ "jobId":{ "shape":"ResourceId", "documentation":"The job's ID.
" } } }, "StatusList":{ "type":"list", "member":{"shape":"ShareStatus"}, "max":10, "min":1 }, "StatusMessage":{ "type":"string", "max":1000, "min":0 }, "StorageType":{ "type":"string", "enum":[ "STATIC", "DYNAMIC" ], "max":64, "min":1 }, "StoreFormat":{ "type":"string", "enum":[ "GFF", "TSV", "VCF" ] }, "StoreId":{ "type":"string", "max":36, "min":10, "pattern":"[0-9]+" }, "StoreName":{ "type":"string", "max":255, "min":3, "pattern":"([a-z]){1}([a-z0-9_]){2,254}" }, "StoreOptions":{ "type":"structure", "members":{ "tsvStoreOptions":{ "shape":"TsvStoreOptions", "documentation":"File settings for a TSV store.
" } }, "documentation":"Settings for a store.
", "union":true }, "StoreStatus":{ "type":"string", "enum":[ "CREATING", "UPDATING", "DELETING", "ACTIVE", "FAILED" ] }, "StoreType":{ "type":"string", "enum":[ "SEQUENCE_STORE", "REFERENCE_STORE" ] }, "String":{"type":"string"}, "SubjectId":{ "type":"string", "max":127, "min":1, "pattern":"[\\p{L}||\\p{M}||\\p{Z}||\\p{S}||\\p{N}||\\p{P}]+" }, "SyntheticTimestamp_date_time":{ "type":"timestamp", "timestampFormat":"iso8601" }, "TagArn":{ "type":"string", "max":128, "min":1, "pattern":"arn:.+" }, "TagKey":{ "type":"string", "max":128, "min":1 }, "TagKeyList":{ "type":"list", "member":{"shape":"TagKey"}, "max":50, "min":0 }, "TagMap":{ "type":"map", "key":{"shape":"TagKey"}, "value":{"shape":"TagValue"} }, "TagResourceRequest":{ "type":"structure", "required":[ "resourceArn", "tags" ], "members":{ "resourceArn":{ "shape":"TagArn", "documentation":"The resource's ARN.
", "location":"uri", "locationName":"resourceArn" }, "tags":{ "shape":"TagResourceRequestTagsMap", "documentation":"Tags for the resource.
" } } }, "TagResourceRequestTagsMap":{ "type":"map", "key":{"shape":"TagKey"}, "value":{"shape":"TagValue"}, "max":50, "min":0 }, "TagResourceResponse":{ "type":"structure", "members":{ } }, "TagValue":{ "type":"string", "max":256, "min":0 }, "TaskFailureReason":{ "type":"string", "max":64, "min":1, "pattern":"[\\p{L}||\\p{M}||\\p{Z}||\\p{S}||\\p{N}||\\p{P}]+" }, "TaskId":{ "type":"string", "max":18, "min":1, "pattern":"[0-9]+" }, "TaskInstanceType":{ "type":"string", "pattern":"[\\p{L}||\\p{M}||\\p{Z}||\\p{S}||\\p{N}||\\p{P}]+" }, "TaskList":{ "type":"list", "member":{"shape":"TaskListItem"} }, "TaskListItem":{ "type":"structure", "members":{ "taskId":{ "shape":"TaskId", "documentation":"The task's ID.
" }, "status":{ "shape":"TaskStatus", "documentation":"The task's status.
" }, "name":{ "shape":"TaskName", "documentation":"The task's name.
" }, "cpus":{ "shape":"TaskListItemCpusInteger", "documentation":"The task's CPU count.
" }, "cacheHit":{ "shape":"Boolean", "documentation":"Set to true if AWS HealthOmics found a matching entry in the run cache for this task.
" }, "cacheS3Uri":{ "shape":"S3UriForBucketOrObject", "documentation":"The S3 URI of the cache location.
" }, "memory":{ "shape":"TaskListItemMemoryInteger", "documentation":"The task's memory use in gigabyes.
" }, "creationTime":{ "shape":"TaskTimestamp", "documentation":"When the task was created.
" }, "startTime":{ "shape":"TaskTimestamp", "documentation":"When the task started.
" }, "stopTime":{ "shape":"TaskTimestamp", "documentation":"When the task stopped.
" }, "gpus":{ "shape":"TaskListItemGpusInteger", "documentation":"The number of Graphics Processing Units (GPU) specified for the task.
" }, "instanceType":{ "shape":"TaskInstanceType", "documentation":"The instance type for a task.
" } }, "documentation":"A workflow run task.
" }, "TaskListItemCpusInteger":{ "type":"integer", "box":true, "min":1 }, "TaskListItemGpusInteger":{ "type":"integer", "box":true, "min":0 }, "TaskListItemMemoryInteger":{ "type":"integer", "box":true, "min":1 }, "TaskListToken":{ "type":"string", "max":128, "min":1, "pattern":"[\\p{L}||\\p{M}||\\p{Z}||\\p{S}||\\p{N}||\\p{P}]+" }, "TaskLogStream":{ "type":"string", "pattern":"[\\p{L}||\\p{M}||\\p{Z}||\\p{S}||\\p{N}||\\p{P}]+" }, "TaskName":{ "type":"string", "max":128, "min":1 }, "TaskStatus":{ "type":"string", "enum":[ "PENDING", "STARTING", "RUNNING", "STOPPING", "COMPLETED", "CANCELLED", "FAILED" ], "max":64, "min":1 }, "TaskStatusMessage":{ "type":"string", "pattern":"[\\p{L}||\\p{M}||\\p{Z}||\\p{S}||\\p{N}||\\p{P}]+" }, "TaskTimestamp":{ "type":"timestamp", "timestampFormat":"iso8601" }, "ThrottlingException":{ "type":"structure", "required":["message"], "members":{ "message":{"shape":"String"} }, "documentation":"The request was denied due to request throttling.
", "error":{ "httpStatusCode":429, "senderFault":true }, "exception":true, "retryable":{"throttling":true} }, "TsvOptions":{ "type":"structure", "members":{ "readOptions":{ "shape":"ReadOptions", "documentation":"The file's read options.
" } }, "documentation":"Formatting options for a TSV file.
" }, "TsvStoreOptions":{ "type":"structure", "members":{ "annotationType":{ "shape":"AnnotationType", "documentation":"The store's annotation type.
" }, "formatToHeader":{ "shape":"FormatToHeader", "documentation":"The store's header key to column name mapping.
" }, "schema":{ "shape":"TsvStoreOptionsSchemaList", "documentation":"The store's schema.
" } }, "documentation":"File settings for a TSV store.
" }, "TsvStoreOptionsSchemaList":{ "type":"list", "member":{"shape":"SchemaItem"}, "max":5000, "min":1 }, "TsvVersionOptions":{ "type":"structure", "members":{ "annotationType":{ "shape":"AnnotationType", "documentation":"The store version's annotation type.
" }, "formatToHeader":{ "shape":"FormatToHeader", "documentation":"The annotation store version's header key to column name mapping.
" }, "schema":{ "shape":"TsvVersionOptionsSchemaList", "documentation":"The TSV schema for an annotation store version.
" } }, "documentation":"The options for a TSV file.
" }, "TsvVersionOptionsSchemaList":{ "type":"list", "member":{"shape":"SchemaItem"}, "max":5000, "min":1 }, "TypeList":{ "type":"list", "member":{"shape":"ShareResourceType"}, "max":10, "min":1 }, "UntagResourceRequest":{ "type":"structure", "required":[ "resourceArn", "tagKeys" ], "members":{ "resourceArn":{ "shape":"TagArn", "documentation":"The resource's ARN.
", "location":"uri", "locationName":"resourceArn" }, "tagKeys":{ "shape":"TagKeyList", "documentation":"Keys of tags to remove.
", "location":"querystring", "locationName":"tagKeys" } } }, "UntagResourceResponse":{ "type":"structure", "members":{ } }, "UpdateAnnotationStoreRequest":{ "type":"structure", "required":["name"], "members":{ "name":{ "shape":"String", "documentation":"A name for the store.
", "location":"uri", "locationName":"name" }, "description":{ "shape":"Description", "documentation":"A description for the store.
" } } }, "UpdateAnnotationStoreResponse":{ "type":"structure", "required":[ "id", "reference", "status", "name", "description", "creationTime", "updateTime" ], "members":{ "id":{ "shape":"ResourceId", "documentation":"The store's ID.
" }, "reference":{ "shape":"ReferenceItem", "documentation":"The store's genome reference.
" }, "status":{ "shape":"StoreStatus", "documentation":"The store's status.
" }, "name":{ "shape":"String", "documentation":"The store's name.
" }, "description":{ "shape":"Description", "documentation":"The store's description.
" }, "creationTime":{ "shape":"CreationTime", "documentation":"When the store was created.
" }, "updateTime":{ "shape":"UpdateTime", "documentation":"When the store was updated.
" }, "storeOptions":{ "shape":"StoreOptions", "documentation":"Parsing options for the store.
" }, "storeFormat":{ "shape":"StoreFormat", "documentation":"The annotation file format of the store.
" } } }, "UpdateAnnotationStoreVersionRequest":{ "type":"structure", "required":[ "name", "versionName" ], "members":{ "name":{ "shape":"String", "documentation":"The name of an annotation store.
", "location":"uri", "locationName":"name" }, "versionName":{ "shape":"String", "documentation":"The name of an annotation store version.
", "location":"uri", "locationName":"versionName" }, "description":{ "shape":"Description", "documentation":"The description of an annotation store.
" } } }, "UpdateAnnotationStoreVersionResponse":{ "type":"structure", "required":[ "storeId", "id", "status", "name", "versionName", "description", "creationTime", "updateTime" ], "members":{ "storeId":{ "shape":"ResourceId", "documentation":"The annotation store ID.
" }, "id":{ "shape":"ResourceId", "documentation":"The annotation store version ID.
" }, "status":{ "shape":"VersionStatus", "documentation":"The status of an annotation store version.
" }, "name":{ "shape":"StoreName", "documentation":"The name of an annotation store.
" }, "versionName":{ "shape":"VersionName", "documentation":"The name of an annotation store version.
" }, "description":{ "shape":"Description", "documentation":"The description of an annotation store version.
" }, "creationTime":{ "shape":"CreationTime", "documentation":"The time stamp for when an annotation store version was created.
" }, "updateTime":{ "shape":"UpdateTime", "documentation":"The time stamp for when an annotation store version was updated.
" } } }, "UpdateRunCacheRequest":{ "type":"structure", "required":["id"], "members":{ "cacheBehavior":{ "shape":"CacheBehavior", "documentation":"Update the default run cache behavior.
" }, "description":{ "shape":"UserCustomDescription", "documentation":"Update the run cache description.
" }, "id":{ "shape":"RunCacheId", "documentation":"The identifier of the run cache you want to update.
", "location":"uri", "locationName":"id" }, "name":{ "shape":"UserCustomName", "documentation":"Update the name of the run cache.
" } } }, "UpdateRunGroupRequest":{ "type":"structure", "required":["id"], "members":{ "id":{ "shape":"RunGroupId", "documentation":"The group's ID.
", "location":"uri", "locationName":"id" }, "name":{ "shape":"RunGroupName", "documentation":"A name for the group.
" }, "maxCpus":{ "shape":"UpdateRunGroupRequestMaxCpusInteger", "documentation":"The maximum number of CPUs to use.
" }, "maxRuns":{ "shape":"UpdateRunGroupRequestMaxRunsInteger", "documentation":"The maximum number of concurrent runs for the group.
" }, "maxDuration":{ "shape":"UpdateRunGroupRequestMaxDurationInteger", "documentation":"A maximum run time for the group in minutes.
" }, "maxGpus":{ "shape":"UpdateRunGroupRequestMaxGpusInteger", "documentation":"The maximum GPUs that can be used by a run group.
" } } }, "UpdateRunGroupRequestMaxCpusInteger":{ "type":"integer", "box":true, "max":100000, "min":1 }, "UpdateRunGroupRequestMaxDurationInteger":{ "type":"integer", "box":true, "max":100000, "min":1 }, "UpdateRunGroupRequestMaxGpusInteger":{ "type":"integer", "box":true, "max":100000, "min":1 }, "UpdateRunGroupRequestMaxRunsInteger":{ "type":"integer", "box":true, "max":100000, "min":1 }, "UpdateSequenceStoreRequest":{ "type":"structure", "required":["id"], "members":{ "id":{ "shape":"SequenceStoreId", "documentation":"The ID of the sequence store.
", "location":"uri", "locationName":"id" }, "name":{ "shape":"SequenceStoreName", "documentation":"A name for the sequence store.
" }, "description":{ "shape":"SequenceStoreDescription", "documentation":"A description for the sequence store.
" }, "clientToken":{ "shape":"ClientToken", "documentation":"To ensure that requests don't run multiple times, specify a unique token for each request.
", "idempotencyToken":true }, "fallbackLocation":{ "shape":"S3Destination", "documentation":"The S3 URI of a bucket and folder to store Read Sets that fail to upload.
" }, "propagatedSetLevelTags":{ "shape":"PropagatedSetLevelTags", "documentation":"The tags keys to propagate to the S3 objects associated with read sets in the sequence store.
" }, "s3AccessConfig":{ "shape":"S3AccessConfig", "documentation":"S3 access configuration parameters.
" } } }, "UpdateSequenceStoreResponse":{ "type":"structure", "required":[ "id", "arn", "creationTime" ], "members":{ "id":{ "shape":"SequenceStoreId", "documentation":"The ID of the sequence store.
" }, "arn":{ "shape":"SequenceStoreArn", "documentation":"The ARN of the sequence store.
" }, "name":{ "shape":"SequenceStoreName", "documentation":"The name of the sequence store.
" }, "description":{ "shape":"SequenceStoreDescription", "documentation":"Description of the sequence store.
" }, "sseConfig":{"shape":"SseConfig"}, "creationTime":{ "shape":"SyntheticTimestamp_date_time", "documentation":"The time when the store was created.
" }, "updateTime":{ "shape":"SyntheticTimestamp_date_time", "documentation":"The last-updated time of the Sequence Store.
" }, "propagatedSetLevelTags":{ "shape":"PropagatedSetLevelTags", "documentation":"The tags keys to propagate to the S3 objects associated with read sets in the sequence store.
" }, "status":{ "shape":"SequenceStoreStatus", "documentation":"The status of the sequence store.
" }, "statusMessage":{ "shape":"SequenceStoreStatusMessage", "documentation":"The status message of the sequence store.
" }, "fallbackLocation":{ "shape":"S3Destination", "documentation":"The S3 URI of a bucket and folder to store Read Sets that fail to upload.
" }, "s3Access":{"shape":"SequenceStoreS3Access"}, "eTagAlgorithmFamily":{ "shape":"ETagAlgorithmFamily", "documentation":"The ETag algorithm family to use on ingested read sets.
" } } }, "UpdateTime":{ "type":"timestamp", "timestampFormat":"iso8601" }, "UpdateVariantStoreRequest":{ "type":"structure", "required":["name"], "members":{ "name":{ "shape":"String", "documentation":"A name for the store.
", "location":"uri", "locationName":"name" }, "description":{ "shape":"Description", "documentation":"A description for the store.
" } } }, "UpdateVariantStoreResponse":{ "type":"structure", "required":[ "id", "reference", "status", "name", "description", "creationTime", "updateTime" ], "members":{ "id":{ "shape":"ResourceId", "documentation":"The store's ID.
" }, "reference":{ "shape":"ReferenceItem", "documentation":"The store's genome reference.
" }, "status":{ "shape":"StoreStatus", "documentation":"The store's status.
" }, "name":{ "shape":"String", "documentation":"The store's name.
" }, "description":{ "shape":"Description", "documentation":"The store's description.
" }, "creationTime":{ "shape":"CreationTime", "documentation":"When the store was created.
" }, "updateTime":{ "shape":"UpdateTime", "documentation":"When the store was updated.
" } } }, "UpdateWorkflowRequest":{ "type":"structure", "required":["id"], "members":{ "id":{ "shape":"WorkflowId", "documentation":"The workflow's ID.
", "location":"uri", "locationName":"id" }, "name":{ "shape":"WorkflowName", "documentation":"A name for the workflow.
" }, "description":{ "shape":"WorkflowDescription", "documentation":"A description for the workflow.
" } } }, "UploadId":{ "type":"string", "max":36, "min":10, "pattern":"[0-9]+" }, "UploadReadSetPartRequest":{ "type":"structure", "required":[ "sequenceStoreId", "uploadId", "partSource", "partNumber", "payload" ], "members":{ "sequenceStoreId":{ "shape":"SequenceStoreId", "documentation":"The Sequence Store ID used for the multipart upload.
", "location":"uri", "locationName":"sequenceStoreId" }, "uploadId":{ "shape":"UploadId", "documentation":"The ID for the initiated multipart upload.
", "location":"uri", "locationName":"uploadId" }, "partSource":{ "shape":"ReadSetPartSource", "documentation":"The source file for an upload part.
", "location":"querystring", "locationName":"partSource" }, "partNumber":{ "shape":"UploadReadSetPartRequestPartNumberInteger", "documentation":"The number of the part being uploaded.
", "location":"querystring", "locationName":"partNumber" }, "payload":{ "shape":"ReadSetPartStreamingBlob", "documentation":"The read set data to upload for a part.
" } }, "payload":"payload" }, "UploadReadSetPartRequestPartNumberInteger":{ "type":"integer", "box":true, "max":10000, "min":1 }, "UploadReadSetPartResponse":{ "type":"structure", "required":["checksum"], "members":{ "checksum":{ "shape":"String", "documentation":"An identifier used to confirm that parts are being added to the intended upload.
" } } }, "UserCustomDescription":{ "type":"string", "max":256, "min":1, "pattern":"[\\p{L}||\\p{M}||\\p{Z}||\\p{S}||\\p{N}||\\p{P}]+" }, "UserCustomName":{ "type":"string", "max":128, "min":1, "pattern":"[\\p{L}||\\p{M}||\\p{Z}||\\p{S}||\\p{N}||\\p{P}]+" }, "ValidationException":{ "type":"structure", "required":["message"], "members":{ "message":{"shape":"String"} }, "documentation":"The input fails to satisfy the constraints specified by an AWS service.
", "error":{ "httpStatusCode":400, "senderFault":true }, "exception":true }, "VariantImportItemDetail":{ "type":"structure", "required":[ "source", "jobStatus" ], "members":{ "source":{ "shape":"S3Uri", "documentation":"The source file's location in Amazon S3.
" }, "jobStatus":{ "shape":"JobStatus", "documentation":"The item's job status.
" }, "statusMessage":{ "shape":"JobStatusMsg", "documentation":"A message that provides additional context about a job
" } }, "documentation":"Details about an imported variant item.
" }, "VariantImportItemDetails":{ "type":"list", "member":{"shape":"VariantImportItemDetail"}, "min":1 }, "VariantImportItemSource":{ "type":"structure", "required":["source"], "members":{ "source":{ "shape":"S3Uri", "documentation":"The source file's location in Amazon S3.
" } }, "documentation":"A imported variant item's source.
" }, "VariantImportItemSources":{ "type":"list", "member":{"shape":"VariantImportItemSource"}, "min":1 }, "VariantImportJobItem":{ "type":"structure", "required":[ "id", "destinationName", "roleArn", "status", "creationTime", "updateTime" ], "members":{ "id":{ "shape":"String", "documentation":"The job's ID.
" }, "destinationName":{ "shape":"String", "documentation":"The job's destination variant store.
" }, "roleArn":{ "shape":"Arn", "documentation":"The job's service role ARN.
" }, "status":{ "shape":"JobStatus", "documentation":"The job's status.
" }, "creationTime":{ "shape":"CreationTime", "documentation":"When the job was created.
" }, "updateTime":{ "shape":"UpdateTime", "documentation":"When the job was updated.
" }, "completionTime":{ "shape":"CompletionTime", "documentation":"When the job completed.
" }, "runLeftNormalization":{ "shape":"RunLeftNormalization", "documentation":"The job's left normalization setting.
" }, "annotationFields":{ "shape":"AnnotationFieldMap", "documentation":"The annotation schema generated by the parsed annotation data.
" } }, "documentation":"A variant import job.
" }, "VariantImportJobItems":{ "type":"list", "member":{"shape":"VariantImportJobItem"} }, "VariantStoreItem":{ "type":"structure", "required":[ "id", "reference", "status", "storeArn", "name", "description", "sseConfig", "creationTime", "updateTime", "statusMessage", "storeSizeBytes" ], "members":{ "id":{ "shape":"ResourceId", "documentation":"The store's ID.
" }, "reference":{ "shape":"ReferenceItem", "documentation":"The store's genome reference.
" }, "status":{ "shape":"StoreStatus", "documentation":"The store's status.
" }, "storeArn":{ "shape":"Arn", "documentation":"The store's ARN.
" }, "name":{ "shape":"String", "documentation":"The store's name.
" }, "description":{ "shape":"Description", "documentation":"The store's description.
" }, "sseConfig":{ "shape":"SseConfig", "documentation":"The store's server-side encryption (SSE) settings.
" }, "creationTime":{ "shape":"CreationTime", "documentation":"When the store was created.
" }, "updateTime":{ "shape":"UpdateTime", "documentation":"When the store was updated.
" }, "statusMessage":{ "shape":"StatusMessage", "documentation":"The store's status message.
" }, "storeSizeBytes":{ "shape":"Long", "documentation":"The store's size in bytes.
" } }, "documentation":"A variant store.
" }, "VariantStoreItems":{ "type":"list", "member":{"shape":"VariantStoreItem"} }, "VcfOptions":{ "type":"structure", "members":{ "ignoreQualField":{ "shape":"Boolean", "documentation":"The file's ignore qual field setting.
" }, "ignoreFilterField":{ "shape":"Boolean", "documentation":"The file's ignore filter field setting.
" } }, "documentation":"Formatting options for a VCF file.
" }, "VersionDeleteError":{ "type":"structure", "required":[ "versionName", "message" ], "members":{ "versionName":{ "shape":"VersionName", "documentation":"The name given to an annotation store version.
" }, "message":{ "shape":"String", "documentation":"The message explaining the error in annotation store deletion.
" } }, "documentation":"The error preventing deletion of the annotation store version.
" }, "VersionDeleteErrorList":{ "type":"list", "member":{"shape":"VersionDeleteError"} }, "VersionList":{ "type":"list", "member":{"shape":"VersionName"}, "max":10, "min":1 }, "VersionName":{ "type":"string", "max":255, "min":3, "pattern":"([a-z]){1}([a-z0-9_]){2,254}" }, "VersionOptions":{ "type":"structure", "members":{ "tsvVersionOptions":{ "shape":"TsvVersionOptions", "documentation":"File settings for a version of a TSV store.
" } }, "documentation":"The options for an annotation store version.
", "union":true }, "VersionStatus":{ "type":"string", "enum":[ "CREATING", "UPDATING", "DELETING", "ACTIVE", "FAILED" ] }, "WorkflowArn":{ "type":"string", "max":128, "min":1, "pattern":"arn:.+" }, "WorkflowDefinition":{ "type":"string", "max":256, "min":1, "pattern":"[\\p{L}||\\p{M}||\\p{Z}||\\p{S}||\\p{N}||\\p{P}]+" }, "WorkflowDescription":{ "type":"string", "max":256, "min":1, "pattern":"[\\p{L}||\\p{M}||\\p{Z}||\\p{S}||\\p{N}||\\p{P}]+" }, "WorkflowDigest":{ "type":"string", "max":64, "min":1 }, "WorkflowEngine":{ "type":"string", "enum":[ "WDL", "NEXTFLOW", "CWL" ], "max":64, "min":1 }, "WorkflowExport":{ "type":"string", "enum":["DEFINITION"], "max":64, "min":1 }, "WorkflowExportList":{ "type":"list", "member":{"shape":"WorkflowExport"}, "max":32, "min":0 }, "WorkflowId":{ "type":"string", "max":18, "min":1, "pattern":"[0-9]+" }, "WorkflowList":{ "type":"list", "member":{"shape":"WorkflowListItem"} }, "WorkflowListItem":{ "type":"structure", "members":{ "arn":{ "shape":"WorkflowArn", "documentation":"The workflow's ARN.
" }, "id":{ "shape":"WorkflowId", "documentation":"The workflow's ID.
" }, "name":{ "shape":"WorkflowName", "documentation":"The workflow's name.
" }, "status":{ "shape":"WorkflowStatus", "documentation":"The workflow's status.
" }, "type":{ "shape":"WorkflowType", "documentation":"The workflow's type.
" }, "digest":{ "shape":"WorkflowDigest", "documentation":"The workflow's digest.
" }, "creationTime":{ "shape":"WorkflowTimestamp", "documentation":"When the workflow was created.
" }, "metadata":{ "shape":"WorkflowMetadata", "documentation":"Any metadata available for workflow. The information listed may vary depending on the workflow, and there may also be no metadata to return.
" } }, "documentation":"A workflow.
" }, "WorkflowListToken":{ "type":"string", "max":128, "min":1, "pattern":"[\\p{L}||\\p{M}||\\p{Z}||\\p{S}||\\p{N}||\\p{P}]+" }, "WorkflowMain":{ "type":"string", "max":128, "min":1, "pattern":"[\\p{L}||\\p{M}||\\p{Z}||\\p{S}||\\p{N}||\\p{P}]+" }, "WorkflowMetadata":{ "type":"map", "key":{"shape":"WorkflowMetadataKey"}, "value":{"shape":"WorkflowMetadataValue"} }, "WorkflowMetadataKey":{ "type":"string", "max":128, "min":1 }, "WorkflowMetadataValue":{ "type":"string", "max":256, "min":0 }, "WorkflowName":{ "type":"string", "max":128, "min":1, "pattern":"[\\p{L}||\\p{M}||\\p{Z}||\\p{S}||\\p{N}||\\p{P}]+" }, "WorkflowOwnerId":{ "type":"string", "pattern":"[0-9]{12}" }, "WorkflowParameter":{ "type":"structure", "members":{ "description":{ "shape":"WorkflowParameterDescription", "documentation":"The parameter's description.
" }, "optional":{ "shape":"Boolean", "documentation":"Whether the parameter is optional.
" } }, "documentation":"A workflow parameter.
" }, "WorkflowParameterDescription":{ "type":"string", "max":256, "min":0, "pattern":"[\\p{L}||\\p{M}||\\p{Z}||\\p{S}||\\p{N}||\\p{P}]+" }, "WorkflowParameterName":{ "type":"string", "max":128, "min":1, "pattern":"[\\p{L}||\\p{M}||\\p{Z}||\\p{S}||\\p{N}||\\p{P}]+" }, "WorkflowParameterTemplate":{ "type":"map", "key":{"shape":"WorkflowParameterName"}, "value":{"shape":"WorkflowParameter"}, "max":1000, "min":1 }, "WorkflowRequestId":{ "type":"string", "max":128, "min":1, "pattern":"[\\p{L}||\\p{M}||\\p{Z}||\\p{S}||\\p{N}||\\p{P}]+" }, "WorkflowStatus":{ "type":"string", "enum":[ "CREATING", "ACTIVE", "UPDATING", "DELETED", "FAILED", "INACTIVE" ], "max":64, "min":1 }, "WorkflowStatusMessage":{ "type":"string", "pattern":"[\\p{L}||\\p{M}||\\p{Z}||\\p{S}||\\p{N}||\\p{P}]+" }, "WorkflowTimestamp":{ "type":"timestamp", "timestampFormat":"iso8601" }, "WorkflowType":{ "type":"string", "enum":[ "PRIVATE", "READY2RUN" ], "max":64, "min":1 } }, "documentation":"This is the AWS HealthOmics API Reference. For an introduction to the service, see What is AWS HealthOmics? in the AWS HealthOmics User Guide.
" }